View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4251_low_10 (Length: 244)
Name: NF4251_low_10
Description: NF4251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4251_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 8040575 - 8040357
Alignment:
| Q |
12 |
gaaggaagggaattgaataaacgtgtagaacaattgttcctacaaataagcctaagccttgacctagtaagtaagtttgtacataaggatttttcaagag |
111 |
Q |
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| T |
8040575 |
gaaggaagggaattgaataaacgtgtagaacaattgttcctacaaataagcctaagccttgacctagtaagtaagtttgtacaaaaggatttttcaagag |
8040476 |
T |
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| Q |
112 |
gattgtacct--atctgacagcaaagcatatatagccaatactcttttttctttaagagaaaaataaggaacattatatatcaaaaattattgagtggtg |
209 |
Q |
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| T |
8040475 |
gattgtacgtgtatctgacagcaaagcatatatagccaatactcttttttctttaagagaaaaataaggaacattatatatcaaaaattattgagtggtg |
8040376 |
T |
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| Q |
210 |
gtagttcctaattttaagt |
228 |
Q |
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|||||| |||||||||||| |
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| T |
8040375 |
gtagtttctaattttaagt |
8040357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 21501579 - 21501637
Alignment:
| Q |
123 |
tctgacagcaaagcatatatagccaatactcttttttctttaagagaaaaataaggaaca |
182 |
Q |
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| T |
21501579 |
tctgactgcaaagcatttatagccaatactgttttat-tttaagagaaaaataaggaaca |
21501637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 31901759 - 31901668
Alignment:
| Q |
132 |
aaagcatatatagccaatactcttttttctttaagagaaaaataaggaacattatatatcaaaaattattgagtggtggtagttcctaattttaag |
227 |
Q |
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||||||| |||||| |||||| |||| | |||||||||||||||||||||| | ||||||| | || |||||||| ||||||| |||||||||| |
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| T |
31901759 |
aaagcatttatagctaatactgttttat-tttaagagaaaaataaggaaca--ctgtatcaaatactagtgagtggt-gtagttcataattttaag |
31901668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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