View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4251_low_8 (Length: 278)

Name: NF4251_low_8
Description: NF4251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4251_low_8
NF4251_low_8
[»] chr1 (27 HSPs)
chr1 (51-263)||(44485985-44486197)
chr1 (189-263)||(6127952-6128026)
chr1 (189-263)||(15581107-15581181)
chr1 (194-263)||(31605818-31605888)
chr1 (196-261)||(39714751-39714816)
chr1 (193-255)||(9160906-9160968)
chr1 (189-263)||(34228910-34228984)
chr1 (189-263)||(38939238-38939312)
chr1 (189-262)||(43446000-43446074)
chr1 (208-261)||(19480565-19480618)
chr1 (189-257)||(3334811-3334879)
chr1 (189-263)||(36428748-36428823)
chr1 (196-263)||(41470583-41470650)
chr1 (201-263)||(39964541-39964603)
chr1 (71-107)||(44482078-44482114)
chr1 (189-260)||(45266873-45266945)
chr1 (196-263)||(39012327-39012394)
chr1 (209-263)||(49101754-49101808)
chr1 (201-257)||(1094567-1094624)
chr1 (200-257)||(20907366-20907423)
chr1 (234-263)||(37047021-37047050)
chr1 (201-257)||(51814536-51814593)
chr1 (194-257)||(8904456-8904520)
chr1 (201-263)||(17297020-17297084)
chr1 (189-256)||(24019066-24019134)
chr1 (207-263)||(44417446-44417501)
chr1 (211-263)||(52289736-52289788)
[»] chr7 (22 HSPs)
chr7 (189-263)||(48125140-48125214)
chr7 (190-253)||(2218660-2218723)
chr7 (189-263)||(46279050-46279124)
chr7 (202-263)||(25956271-25956332)
chr7 (189-257)||(18847388-18847456)
chr7 (189-263)||(38374564-38374639)
chr7 (189-261)||(48039612-48039685)
chr7 (201-264)||(2882985-2883049)
chr7 (201-261)||(22696355-22696415)
chr7 (201-257)||(23330845-23330901)
chr7 (201-261)||(28647004-28647064)
chr7 (201-263)||(5579211-5579274)
chr7 (201-263)||(19553489-19553552)
chr7 (233-263)||(21050150-21050180)
chr7 (221-263)||(23637013-23637055)
chr7 (189-261)||(31835230-31835303)
chr7 (189-263)||(33460387-33460463)
chr7 (193-238)||(45559253-45559298)
chr7 (201-261)||(17212088-17212148)
chr7 (216-260)||(17274003-17274047)
chr7 (208-263)||(22760899-22760955)
chr7 (193-245)||(42183017-42183069)
[»] chr6 (15 HSPs)
chr6 (189-263)||(6691516-6691590)
chr6 (189-257)||(9583408-9583476)
chr6 (189-257)||(3869738-3869806)
chr6 (201-261)||(9208283-9208343)
chr6 (186-263)||(3433564-3433641)
chr6 (189-245)||(24333990-24334046)
chr6 (195-263)||(24762379-24762447)
chr6 (196-263)||(6383976-6384042)
chr6 (196-263)||(7484232-7484299)
chr6 (201-263)||(28028566-28028628)
chr6 (204-261)||(17149565-17149622)
chr6 (190-263)||(20864173-20864245)
chr6 (201-245)||(8597724-8597768)
chr6 (201-261)||(10377746-10377806)
chr6 (201-261)||(13753271-13753331)
[»] chr4 (19 HSPs)
chr4 (189-263)||(21344853-21344927)
chr4 (189-263)||(25414180-25414254)
chr4 (53-109)||(45050944-45051000)
chr4 (184-263)||(37980108-37980187)
chr4 (189-260)||(46295136-46295208)
chr4 (189-263)||(56409987-56410060)
chr4 (208-263)||(32992648-32992704)
chr4 (189-260)||(55256164-55256235)
chr4 (189-261)||(30938184-30938257)
chr4 (192-232)||(33867370-33867410)
chr4 (189-263)||(8325344-8325419)
chr4 (229-263)||(5998693-5998727)
chr4 (189-263)||(29195131-29195205)
chr4 (189-263)||(37492683-37492757)
chr4 (189-263)||(47183358-47183432)
chr4 (234-263)||(38206136-38206165)
chr4 (201-264)||(5795386-5795450)
chr4 (191-263)||(27971887-27971959)
chr4 (201-261)||(40058958-40059018)
[»] chr3 (26 HSPs)
chr3 (189-263)||(53863833-53863907)
chr3 (192-263)||(11092138-11092209)
chr3 (189-263)||(40268525-40268599)
chr3 (203-263)||(15034381-15034441)
chr3 (193-263)||(31714353-31714423)
chr3 (189-263)||(43303794-43303868)
chr3 (193-263)||(37944768-37944837)
chr3 (194-260)||(40777052-40777118)
chr3 (201-258)||(47236948-47237006)
chr3 (202-263)||(34844407-34844468)
chr3 (189-261)||(47454582-47454655)
chr3 (194-263)||(28834941-28835012)
chr3 (193-261)||(42430372-42430439)
chr3 (189-228)||(49701107-49701146)
chr3 (207-261)||(4252508-4252562)
chr3 (194-263)||(53412981-53413051)
chr3 (207-260)||(7201021-7201074)
chr3 (234-263)||(35623277-35623306)
chr3 (220-261)||(36660801-36660842)
chr3 (234-263)||(42799758-42799787)
chr3 (189-261)||(44069796-44069869)
chr3 (207-259)||(10538238-10538290)
chr3 (207-263)||(10682927-10682983)
chr3 (201-261)||(32151455-32151515)
chr3 (201-261)||(39041958-39042018)
chr3 (194-246)||(46552985-46553037)
[»] chr2 (20 HSPs)
chr2 (189-263)||(342431-342505)
chr2 (189-263)||(6099484-6099558)
chr2 (189-260)||(16525217-16525288)
chr2 (189-263)||(3697365-3697439)
chr2 (189-263)||(41908603-41908678)
chr2 (189-263)||(27967114-27967188)
chr2 (202-263)||(26176304-26176365)
chr2 (195-263)||(18825377-18825445)
chr2 (189-263)||(26482129-26482203)
chr2 (195-263)||(7250265-7250333)
chr2 (189-261)||(39273534-39273606)
chr2 (192-263)||(25384572-25384643)
chr2 (189-263)||(30359690-30359764)
chr2 (201-261)||(8192457-8192517)
chr2 (201-261)||(28194239-28194299)
chr2 (189-260)||(6890372-6890441)
chr2 (193-259)||(11138685-11138750)
chr2 (201-257)||(37480117-37480174)
chr2 (234-263)||(43963999-43964028)
chr2 (189-241)||(21213828-21213880)
[»] chr8 (19 HSPs)
chr8 (189-263)||(40136929-40137002)
chr8 (191-263)||(6530843-6530915)
chr8 (189-263)||(22268899-22268973)
chr8 (189-230)||(27557609-27557650)
chr8 (201-263)||(2203528-2203591)
chr8 (189-263)||(6536556-6536631)
chr8 (196-263)||(34778771-34778838)
chr8 (189-263)||(29855384-29855458)
chr8 (201-261)||(18128548-18128608)
chr8 (189-263)||(11793486-11793561)
chr8 (201-263)||(28783096-28783159)
chr8 (190-241)||(35475542-35475593)
chr8 (189-263)||(16317647-16317721)
chr8 (235-263)||(5438450-5438478)
chr8 (207-263)||(9126567-9126623)
chr8 (189-261)||(10778778-10778853)
chr8 (201-261)||(15974940-15974999)
chr8 (201-261)||(21239384-21239444)
chr8 (201-261)||(41070796-41070856)
[»] chr5 (12 HSPs)
chr5 (194-263)||(16457846-16457916)
chr5 (189-263)||(16172949-16173023)
chr5 (194-263)||(37421321-37421390)
chr5 (201-261)||(40330664-40330724)
chr5 (212-258)||(84865-84912)
chr5 (196-263)||(16247102-16247169)
chr5 (201-263)||(30883175-30883238)
chr5 (213-263)||(31669014-31669064)
chr5 (234-263)||(15485430-15485459)
chr5 (208-263)||(3315251-3315307)
chr5 (235-263)||(5943893-5943921)
chr5 (201-261)||(19145517-19145577)
[»] scaffold0189 (1 HSPs)
scaffold0189 (194-263)||(17694-17763)
[»] scaffold0172 (1 HSPs)
scaffold0172 (201-260)||(15754-15814)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 51 - 263
Target Start/End: Original strand, 44485985 - 44486197
Alignment:
Q  51 tagagtgagtgagaaagagggaatggtgcaagtggagttatgaacaaaaccatgtagtcgcatcattgggctgcatctatgaaaagttgcttcattttca 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44485985 tagagtgagtgagaaagagggaatggtgcaagtggagttatgaacaaaaccatgtagtcgcatcattgggctgcatctatgaaaagttgtttcattttca 44486084  T
Q  151 ctatttaattcagagtaaaaatattannnnnnncaaacaagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggag 250  Q
    ||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44486085 ctatttaattcagagtaaaaatattatttttttcgaacaagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggag 44486184  T
Q  251 cacactccaaggt 263  Q
    |||||||||||||    
T  44486185 cacactccaaggt 44486197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 6127952 - 6128026
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  6127952 aagccaaactagcccaccaaaattggcaccggggagaatcgaacttgagaccttgagaggagcacgctccaaggt 6128026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 15581107 - 15581181
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| |||||||||||  ||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  15581107 aagccaaactagcccaccgaaatcagcaccggggagaattgaacctgagacctttagaggagcacactccaaggt 15581181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 31605818 - 31605888
Alignment:
Q  194 aaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||||| |||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||    
T  31605818 aaactagcccacccaaattggcaccggggagaatcgaacttgagaccttgaggaggagcacacttcaaggt 31605888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 39714751 - 39714816
Alignment:
Q  196 actaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||| ||||||||||| ||||||| |||||||  || |||||||||||||||||||||||||||||    
T  39714751 actagcccaccgaaatcggcaccgaggagaatcaaacttgagaccttgagaggagcacactccaag 39714816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 9160906 - 9160968
Alignment:
Q  193 caaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacac 255  Q
    |||| ||| ||||||||||||  |||| |||||||||||| ||||||||||||||||||||||    
T  9160906 caaattaatccaccgaaattgataccgaggagaattgaatatgagaccttgagaggagcacac 9160968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 34228984 - 34228910
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| |||||| ||||||||||||| ||||||  ||  |||||||||||||||| |||||||| ||||    
T  34228984 aagccaaactagcccaccaaaattggcaccggagagaatccaacctgagaccttgagaggaacacactccgaggt 34228910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 38939312 - 38939238
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| ||||||||||||| ||  |||||||||  ||   |||||||||||||||||||||||||||||    
T  38939312 aagccaaactagcccaccgaaattgacattggggagaatcaaaccagagaccttgagaggagcacactccaaggt 38939238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 43446074 - 43446000
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaagg 262  Q
    |||| |||||| |||||  |||||||||||||||||||| |||  ||||||||||| ||||||||||||||||||    
T  43446074 aagctaaactagcccactcaaattggcaccggggagaatcgaacatgagaccttgaggaggagcacactccaagg 43446000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 19480618 - 19480565
Alignment:
Q  208 aaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||| || |||| |||| ||||||||||||||||||||||||||||    
T  19480618 aaattggcaccgcggggaatcgaatgtgagaccttgagaggagcacactccaag 19480565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 3334879 - 3334811
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactc 257  Q
    |||||||| || ||||||||||| || |||||| ||||| ||| |||||||||||||| ||||||||||    
T  3334879 aagccaaattagcccaccgaaatcggaaccgggaagaatcgaacttgagaccttgagaagagcacactc 3334811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 36428823 - 36428748
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||| |||||| |||||| ||||||||||||||||||||  ||  ||||||||||| |||||||| ||||||||||    
T  36428823 aagcaaaactagcccacccaaattggcaccggggagaatcaaacatgagaccttgaggaggagcatactccaaggt 36428748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 41470583 - 41470650
Alignment:
Q  196 actaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| ||||| ||||||||||| | || |||| ||| |||||||||||||||||||| ||||||||||    
T  41470583 actagcccactgaaattggcactgtggggaatcgaacttgagaccttgagaggagcatactccaaggt 41470650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 39964603 - 39964541
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||||||| | | ||||  ||  ||||||||||||||||||||||||||||||    
T  39964603 cccaccgaaattggcaccagagggaatcaaacctgagaccttgagaggagcacactccaaggt 39964541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 44482078 - 44482114
Alignment:
Q  71 gaatggtgcaagtggagttatgaacaaaaccatgtag 107  Q
    ||||||||||||| |||||||||||||||||||||||    
T  44482078 gaatggtgcaagtagagttatgaacaaaaccatgtag 44482114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 45266945 - 45266873
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaa 260  Q
    |||| |||||| |||| | |||||||||||||||||||| |||  ||||||||||| |||||||| |||||||    
T  45266945 aagctaaactagcccatccaaattggcaccggggagaatcgaacctgagaccttgaggaggagcaaactccaa 45266873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 39012394 - 39012327
Alignment:
Q  196 actaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| ||||||||||||||||||| || ||||  ||  | ||||||||||| ||||||||||||||||    
T  39012394 actagcccaccgaaattggcaccgaggggaatcaaacctaagaccttgagaagagcacactccaaggt 39012327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 49101754 - 49101808
Alignment:
Q  209 aattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||| ||| ||||  ||| | ||||||||||||||||||||||||||||    
T  49101754 aattggcaccagggggaatcaaatgtaagaccttgagaggagcacactccaaggt 49101808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 1094624 - 1094567
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttg-agaggagcacactc 257  Q
    |||||| ||||||||||||| |||||| ||||||||||||| |  |||||||||||||    
T  1094624 cccacctaaattggcaccggagagaatcgaatttgagacctcgtggaggagcacactc 1094567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 20907366 - 20907423
Alignment:
Q  200 acccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactc 257  Q
    |||||| ||||||||||||   | ||||||||  ||||||||||||||||||||||||    
T  20907366 acccactgaaattggcaccaaagtgaattgaacgtgagaccttgagaggagcacactc 20907423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Complemental strand, 37047050 - 37047021
Alignment:
Q  234 tgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||||||||||||||||||||||    
T  37047050 tgagaccttgagaggagcacactccaaggt 37047021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 51814593 - 51814536
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactc 257  Q
    |||||| ||||||||||||| |||||| |||  ||||||||||| |||||||||||||    
T  51814593 cccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactc 51814536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 8904520 - 8904456
Alignment:
Q  194 aaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactc 257  Q
    |||||||||| |  ||||||||||| | |||||| ||| |||||||||||| |||||||||||||    
T  8904520 aaactaaccccctcaaattggcaccagagagaatcgaacttgagaccttgaggaggagcacactc 8904456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 17297084 - 17297020
Alignment:
Q  201 cccaccgaaattggcaccgggg-agaattgaatttgagaccttgag-aggagcacactccaaggt 263  Q
    |||||| ||||||||||||||| |||||  ||  |||||||||||| ||||||||||||||||||    
T  17297084 cccacccaaattggcaccgggggagaatcaaacatgagaccttgaggaggagcacactccaaggt 17297020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 24019134 - 24019066
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacact 256  Q
    |||| |||||| |||||||||||||| |||| ||||||| |||  | ||||||||| ||||||||||||    
T  24019134 aagctaaactagcccaccgaaattggtaccgaggagaatcgaacctaagaccttgaggaggagcacact 24019066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 44417446 - 44417501
Alignment:
Q  207 gaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||||| ||||  ||  |||||||||||||| |||||||||||||||    
T  44417446 gaaattggcaccgggg-gaatcaaacctgagaccttgagagcagcacactccaaggt 44417501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 52289788 - 52289736
Alignment:
Q  211 ttggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||| ||||||||  ||||||||| ||| |||||||| |||||||||||    
T  52289788 ttggcaccagggagaatcaaatttgagaacttaagaggagcgcactccaaggt 52289736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 48125140 - 48125214
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| ||||||||||||||||||||||| |||||||  |||||||||  |||||||||||||||||||    
T  48125140 aagccaaactagcccaccgaaattggcaccggggaaaattgaacctgagaccttcggaggagcacactccaaggt 48125214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 2218660 - 2218723
Alignment:
Q  190 agccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcac 253  Q
    |||||||||||| |||| |||||||| |||||||||||||||  ||||||||| ||||||||||    
T  2218660 agccaaactaactcaccaaaattggctccggggagaattgaacctgagaccttaagaggagcac 2218723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 46279124 - 46279050
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||| ||||||||||| |  |||||||||  ||   |||||||||||||||||||||||||||||    
T  46279124 aagccaaactaacctaccgaaattgggaatggggagaatcaaaccggagaccttgagaggagcacactccaaggt 46279050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 25956271 - 25956332
Alignment:
Q  202 ccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||| |||| |||| ||||||||||||  | ||||||||||||||||||||||||||||    
T  25956271 ccaccgacattgacaccagggagaattgaacctaagaccttgagaggagcacactccaaggt 25956332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 18847388 - 18847456
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactc 257  Q
    |||||||| |||||| || ||||||||||||| |||||  ||| |||||| ||||||||||||||||||    
T  18847388 aagccaaattaacccgccaaaattggcaccggagagaaacgaacttgagatcttgagaggagcacactc 18847456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 38374564 - 38374639
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||| |||||| |||||| |||||||||||||||||||| |||  | ||||||||| ||||||||||||| |||||    
T  38374564 aagctaaactagcccacctaaattggcaccggggagaatcgaacctaagaccttgaggaggagcacactctaaggt 38374639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 48039612 - 48039685
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgag-aggagcacactccaag 261  Q
    ||||||||||| || ||||||||||||||| |||||||| |||  |||||||||| | ||||||| ||||||||    
T  48039612 aagccaaactagccaaccgaaattggcaccagggagaatagaacctgagaccttgcgaaggagcatactccaag 48039685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 2883049 - 2882985
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggtg 264  Q
    |||||| |||||| |||| | ||||||||||  ||||||||||| ||||||||||||||||||||    
T  2883049 cccacctaaattgccaccagagagaattgaacctgagaccttgaggaggagcacactccaaggtg 2882985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 22696415 - 22696355
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| | | ||||  ||  ||||||||||||||||||||||||||||    
T  22696415 cccaccgaaattggcaccagagggaatcaaacctgagaccttgagaggagcacactccaag 22696355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 23330845 - 23330901
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactc 257  Q
    |||||||||||||||||||| | || | |||  ||||||||||||||||||||||||    
T  23330845 cccaccgaaattggcaccggagggagtcgaacctgagaccttgagaggagcacactc 23330901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 28647064 - 28647004
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| | | |||| |||  |||||||||||||| |||||||||||||    
T  28647064 cccaccgaaattggcaccagagggaatcgaacctgagaccttgagagaagcacactccaag 28647004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 5579211 - 5579274
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||||| |||||||||||||||||| |  ||  ||||||||||| |||||||||||||||||||    
T  5579211 cccacccaaattggcaccggggagagtcaaacctgagaccttgaggaggagcacactccaaggt 5579274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 19553552 - 19553489
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||||| ||||||| ||||||||||||||||  | ||||||||| |||||||||||||| ||||    
T  19553552 cccacctaaattggaaccggggagaattgaacctaagaccttgaggaggagcacactcccaggt 19553489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 21050150 - 21050180
Alignment:
Q  233 ttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||||||||||||||||||||    
T  21050150 ttgagaccttgagaggagcacactccaaggt 21050180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 23637013 - 23637055
Alignment:
Q  221 ggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||  || |||||||||||||||||||||||||||    
T  23637013 ggagaattgaacgtgcgaccttgagaggagcacactccaaggt 23637055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 31835303 - 31835230
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaag 261  Q
    |||| |||||| ||| || ||||||||||| |||| ||| |||  ||||||||||| |||||||||||||||||    
T  31835303 aagctaaactagcccgccaaaattggcaccagggataatcgaacctgagaccttgaggaggagcacactccaag 31835230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 33460387 - 33460463
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga--gaggagcacactccaaggt 263  Q
    |||| |||||| |||||  |||||| ||||||||||||| |||| |||||||||||  ||||| |||||||| ||||    
T  33460387 aagctaaactagcccacataaattgacaccggggagaatcgaatctgagaccttgaaggaggaccacactcctaggt 33460463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 45559298 - 45559253
Alignment:
Q  193 caaactaacccaccgaaattggcaccggggagaattgaatttgaga 238  Q
    |||| ||||||||| |||||||||||||||||||| ||| ||||||    
T  45559298 caaattaacccaccaaaattggcaccggggagaatcgaacttgaga 45559253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 17212148 - 17212088
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| | ||||||||||  ||||||||   |||||||| ||||||||    
T  17212148 cccaccgaaattggcaccagagagaattgaacctgagacctctggaggagcaaactccaag 17212088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 17274047 - 17274003
Alignment:
Q  216 accggggagaattgaatttgagaccttgagaggagcacactccaa 260  Q
    |||||| ||||||||||||||||  |||||||||||| |||||||    
T  17274047 accgggaagaattgaatttgagattttgagaggagcatactccaa 17274003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 22760955 - 22760899
Alignment:
Q  208 aaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    ||||||||| |||||||||| |||  ||||||||||| |||||||||||||| ||||    
T  22760955 aaattggcatcggggagaatcgaacctgagaccttgaggaggagcacactcccaggt 22760899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 42183017 - 42183069
Alignment:
Q  193 caaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgag 245  Q
    |||||||||| |||||||||||||| | ||| ||| |||||| ||||||||||    
T  42183017 caaactaacctaccgaaattggcactgaggataatcgaatttaagaccttgag 42183069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 6691516 - 6691590
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| || ||||||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||    
T  6691516 aagccaaactaccctaccgaaattggcaccggagagaatcgaacctgagaccttgagaggagcacactccaaggt 6691590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 9583476 - 9583408
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactc 257  Q
    |||| ||||||||||||||||||||||||| | |||||| ||| | |||||||||||||||||||||||    
T  9583476 aagctaaactaacccaccgaaattggcaccagagagaatcgaactggagaccttgagaggagcacactc 9583408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 3869806 - 3869738
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactc 257  Q
    ||||||||||| |||||| | |||||||||||||||||| |||  ||||||||||| || |||||||||    
T  3869806 aagccaaactatcccaccaatattggcaccggggagaatcgaacatgagaccttgatagaagcacactc 3869738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 9208343 - 9208283
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| ||| |||| |||  ||||||||||||||||||| ||||||||    
T  9208343 cccaccgaaattggcaccagggggaatcgaacctgagaccttgagaggagcaaactccaag 9208283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 3433564 - 3433641
Alignment:
Q  186 aacaagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||| |||||||  ||||||||||  |||||| ||| ||| |||  ||||||||||||||||||| ||||||||||    
T  3433564 aacaagtcaaactagtccaccgaaatatgcaccgaggaaaatcgaacctgagaccttgagaggagcaaactccaaggt 3433641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 24333990 - 24334046
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgag 245  Q
    |||| |||||| |||||| ||||||||||||| ||||||||||  ||||||||||||    
T  24333990 aagctaaactagcccacccaaattggcaccggtgagaattgaacctgagaccttgag 24334046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 24762379 - 24762447
Alignment:
Q  195 aactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||| |||||| ||||||||||||||||| || |||  | ||||||| |||||||||||| |||||||    
T  24762379 aactagcccaccaaaattggcaccggggaggatcgaacctaagaccttaagaggagcacacaccaaggt 24762447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 6383976 - 6384042
Alignment:
Q  196 actaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| ||||| |||||||||||| | | || |||||  ||||||||||||||||||||||||||||||    
T  6383976 actagcccactgaaattggcacccgaggga-ttgaacctgagaccttgagaggagcacactccaaggt 6384042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 7484232 - 7484299
Alignment:
Q  196 actaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| |||||||||||||||||||||| ||||  ||  |||||||||||| ||||||| || ||||||    
T  7484232 actagcccaccgaaattggcaccggggggaatctaacgtgagaccttgagcggagcactcttcaaggt 7484299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 28028628 - 28028566
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| ||||||||||| | |||||||| |||  |||||||||||||||||| ||||| |||||    
T  28028628 cccatcgaaattggcatcagggagaatcgaacatgagaccttgagaggagctcactcaaaggt 28028566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 17149565 - 17149622
Alignment:
Q  204 accgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    ||||||||| ||||| | | |||| |||  ||||||||||||||||||||||||||||    
T  17149565 accgaaattagcaccagagggaatcgaacctgagaccttgagaggagcacactccaag 17149622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 20864173 - 20864245
Alignment:
Q  190 agccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||| ||||| ||||||| |||||| || ||| ||| |  |||| |||||||||||||||||||||||    
T  20864173 agccaaactagcccactgaaattgacaccggagataatcgaacta-agacattgagaggagcacactccaaggt 20864245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 8597724 - 8597768
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgag 245  Q
    |||||| |||||||||| || |||||||||| |||||||||||||    
T  8597724 cccacccaaattggcactggagagaattgaacttgagaccttgag 8597768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 10377806 - 10377746
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    ||||||||||||||||||   | ||||||||  ||||||||||| | ||||||||||||||    
T  10377806 cccaccgaaattggcaccatagggaattgaacctgagaccttgacatgagcacactccaag 10377746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 13753331 - 13753271
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| | ||||||||||  ||||||||   |||||||| ||||||||    
T  13753331 cccaccgaaattggcaccagagagaattgaacctgagacctctggaggagcaaactccaag 13753271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 21344927 - 21344853
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| |||||| |||||| ||| |||||||||||||  ||||||||||||||||||||||||||||||    
T  21344927 aagccaaactagcccacctaaattgacactggggagaattgaacatgagaccttgagaggagcacactccaaggt 21344853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 25414180 - 25414254
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||||||| ||||||||||||||||||||  ||  |||||| |||||||||||||||||||||||    
T  25414180 aagccaaactaacccaccaaaattggcaccggggagaatcaaacctgagactttgagaggagcacactccaaggt 25414254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 45050944 - 45051000
Alignment:
Q  53 gagtgagtgagaaagagggaatggtgcaagtggagttatgaacaaaaccatgtagtc 109  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  45050944 gagtgagtgagaaatagggaatggtgcaagtggagttaagaacaaaaccatgtagtc 45051000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 37980108 - 37980187
Alignment:
Q  184 caaacaagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| ||||||||||| ||| | ||||||| ||| ||||||||| |||  ||||||||||||||||||||||||||||||    
T  37980108 caaagaagccaaactagcccgctgaaattgacactggggagaatcgaacctgagaccttgagaggagcacactccaaggt 37980187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 46295208 - 46295136
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaa 260  Q
    |||| |||||| |||||| |||||||||||||||||||| |||  ||||||||||| ||||||||||||||||    
T  46295208 aagctaaactagcccacccaaattggcaccggggagaatcgaacctgagaccttgaggaggagcacactccaa 46295136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 56410060 - 56409987
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| | ||||||  |||||||| |||||||| |||  ||||||||||||||||||||||||||||||    
T  56410060 aagccaaactagcacaccgag-ttggcaccagggagaatcgaacctgagaccttgagaggagcacactccaaggt 56409987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 32992704 - 32992648
Alignment:
Q  208 aaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  32992704 aaattgacaccggggagaatcgaacttgagaccttgaggaggagcacactccaaggt 32992648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 55256164 - 55256235
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaa 260  Q
    ||||||||||| |||||| |||||||||||| ||||||| |||  |||| ||||||| | ||||||||||||    
T  55256164 aagccaaactagcccaccaaaattggcaccgaggagaatcgaacctgaggccttgagggaagcacactccaa 55256235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 30938184 - 30938257
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaag 261  Q
    |||| ||||||||||||| |||||||||  ||||||||| |||  |||||||| || |||||||||||||||||    
T  30938184 aagctaaactaacccacctaaattggcattggggagaatcgaacctgagacctcgaggaggagcacactccaag 30938257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 33867410 - 33867370
Alignment:
Q  192 ccaaactaacccaccgaaattggcaccggggagaattgaat 232  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  33867410 ccaaactagcccaccgaaattggcaccggggagaatcgaat 33867370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 8325344 - 8325419
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||| |||||| |||||| |||||| ||||||||||||| |||  | ||||||||| || ||||||||||||||||    
T  8325344 aagctaaactagcccacccaaattgacaccggggagaatcgaacctaagaccttgaggatgagcacactccaaggt 8325419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 5998693 - 5998727
Alignment:
Q  229 gaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| ||||||||||||||||||||||||||||||    
T  5998693 gaatgtgagaccttgagaggagcacactccaaggt 5998727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 29195205 - 29195131
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| |||||| || ||| |||||||||   | |||||| ||| ||| |||||||||||||||||||||||||||    
T  29195205 aagctaaactagccaaccaaaattggcattagagagaatcgaacttgcgaccttgagaggagcacactccaaggt 29195131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 37492683 - 37492757
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||| || |||||| ||||| ||||  |||||| | |||  |||||||||||||||| |||||||||||||    
T  37492683 aagccaaattagcccaccaaaattagcactcgggagagtcgaacctgagaccttgagaggatcacactccaaggt 37492757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 47183432 - 47183358
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||   |||||||||||| ||||||| | ||| |||  ||||| |||||||||| |||||||||||||    
T  47183432 aagccaaacttgtccaccgaaattgacaccgggaaaaatcgaacctgagatcttgagaggatcacactccaaggt 47183358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Original strand, 38206136 - 38206165
Alignment:
Q  234 tgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||||||||||||||||||||||    
T  38206136 tgagaccttgagaggagcacactccaaggt 38206165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 5795386 - 5795450
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggtg 264  Q
    |||||| |||||||||| |||||||||  ||  ||||||||||| |||||||| |||||||||||    
T  5795386 cccacccaaattggcactggggagaatcaaacctgagaccttgaggaggagcatactccaaggtg 5795450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 27971887 - 27971959
Alignment:
Q  191 gccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||| | ||||||||||||||||||| | | ||| |||   || ||||||||||||||| ||||||||||    
T  27971887 gccaaaccatcccaccgaaattggcaccgcgcataatcgaaccagaaaccttgagaggagcagactccaaggt 27971959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 40058958 - 40059018
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| | |||||| |||  ||||||||  ||||||||| ||||||||    
T  40058958 cccaccgaaattggcaccagagagaatcgaacctgagacctctagaggagcaaactccaag 40059018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 53863833 - 53863907
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||||| ||||||||||||| | ||||||||||  | ||||||||||||||||||||||||||||    
T  53863833 aagccaaactaacccaacgaaattggcaccagagagaattgaacctaagaccttgagaggagcacactccaaggt 53863907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 11092138 - 11092209
Alignment:
Q  192 ccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||| |||||||| ||||||    
T  11092138 ccaaactaacccaccgaaattagcaccagggagaatcgaagttgagaccttgagagtagcacactacaaggt 11092209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 40268599 - 40268525
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| ||||||||||||||||||||||| |||||||||| |||  ||||||||| |||||||| |||||||||||    
T  40268599 aagctaaactaacccaccgaaattggcatcggggagaatcgaacctgagaccttaagaggagcccactccaaggt 40268525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 15034441 - 15034381
Alignment:
Q  203 caccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||| ||| |||||||||    
T  15034441 caccgaaattggcaccagggagaattgaacctgagaccttgagaggatcaccctccaaggt 15034381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 31714423 - 31714353
Alignment:
Q  193 caaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| |||||||||||||||| ||| |  |||||| ||| |||||||||||||||||||||||| ||||||    
T  31714423 caaattaacccaccgaaattgacactgatgagaatcgaacttgagaccttgagaggagcacacttcaaggt 31714353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 43303868 - 43303794
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| |||||||| ||| ||||||||||||||  ||  |||||||| ||||||||||| |||||||||    
T  43303868 aagccaaactagcccaccgatattagcaccggggagaatcaaacctgagacctggagaggagcacgctccaaggt 43303794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 37944768 - 37944837
Alignment:
Q  193 caaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||| |||||| |||||| |||  ||||||||||||  ||| ||||||||||||||||||||||||||    
T  37944768 caaactagcccacccaaattgacacttgggagaattgaacctga-accttgagaggagcacactccaaggt 37944837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 40777118 - 40777052
Alignment:
Q  194 aaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaa 260  Q
    |||||| |||||||||||||||||  | ||||||  ||  |||||||||||||||||||||||||||    
T  40777118 aaactagcccaccgaaattggcactagagagaatcaaacctgagaccttgagaggagcacactccaa 40777052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 47236948 - 47237006
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttg-agaggagcacactcc 258  Q
    |||||| |||||||||||||||||||| |||  |||||||||| |||||||||||||||    
T  47236948 cccacccaaattggcaccggggagaatcgaacatgagaccttgaagaggagcacactcc 47237006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 34844468 - 34844407
Alignment:
Q  202 ccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||| | || | |||| |||  ||||||||||||||||||||||||||||||    
T  34844468 ccaccgaaattggctctggagggaatcgaacctgagaccttgagaggagcacactccaaggt 34844407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 47454582 - 47454655
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaag 261  Q
    |||| ||||||||||||| |||||||||  ||||||||| |||  |||||||| || |||||||||||||||||    
T  47454582 aagctaaactaacccacctaaattggcattggggagaatcgaacctgagacctcgaggaggagcacactccaag 47454655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 28834941 - 28835012
Alignment:
Q  194 aaactaacccaccgaaattggcaccgggga--gaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||| ||||| |||||||||||||||||  || | ||| |||||||||||||||||  ||||||||||||    
T  28834941 aaactagcccactgaaattggcaccggggaaagattcgaacttgagaccttgagaggaagacactccaaggt 28835012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 42430439 - 42430372
Alignment:
Q  193 caaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    ||||||| ||| ||||||||||||  ||||||||| ||| |  ||||||||||||||||||||||||||    
T  42430439 caaactagccccccgaaattggcattggggagaatcgaacta-agaccttgagaggagcacactccaag 42430372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 49701146 - 49701107
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaatt 228  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  49701146 aagccaaactagcccaccaaaattggcaccggggagaatt 49701107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 4252508 - 4252562
Alignment:
Q  207 gaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||| | | ||||  || |||||||||||||||||||||||||||||    
T  4252508 gaaattggcaccagagggaatcaaacttgagaccttgagaggagcacactccaag 4252562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 53413051 - 53412981
Alignment:
Q  194 aaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||||||||| |  ||||||||||| | ||||||||||  ||||||||||| |||||||||||||| ||||    
T  53413051 aaactaaccccctcaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcccaggt 53412981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 7201074 - 7201021
Alignment:
Q  207 gaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaa 260  Q
    |||||||||||||  |||||| |||| ||| |||||||||||| ||||||||||    
T  7201074 gaaattggcaccgaagagaatcgaatctgaaaccttgagaggatcacactccaa 7201021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Original strand, 35623277 - 35623306
Alignment:
Q  234 tgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||||||||||||||||||||||    
T  35623277 tgagaccttgagaggagcacactccaaggt 35623306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 36660842 - 36660801
Alignment:
Q  220 gggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    ||||||||||||  ||||||||||||||||||| ||||||||    
T  36660842 gggagaattgaacctgagaccttgagaggagcaaactccaag 36660801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Original strand, 42799758 - 42799787
Alignment:
Q  234 tgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||||||||||||||||||||||    
T  42799758 tgagaccttgagaggagcacactccaaggt 42799787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 44069869 - 44069796
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaag 261  Q
    |||| |||||| |||||| |||||||||||||  |||||  ||  ||||||||||| |||||||||||||||||    
T  44069869 aagctaaactagcccacctaaattggcaccggaaagaatcaaacctgagaccttgaggaggagcacactccaag 44069796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 10538238 - 10538290
Alignment:
Q  207 gaaattggcaccggggagaattgaatttgagaccttgagaggagcacactcca 259  Q
    |||||||| |||  |||||||||||| |||||| ||||||| |||||||||||    
T  10538238 gaaattgggaccaaggagaattgaatctgagactttgagagaagcacactcca 10538290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 10682927 - 10682983
Alignment:
Q  207 gaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||| |||  |||||||||||  |||||| ||||||| |||||||||||||||    
T  10682927 gaaattgggaccaaggagaattgaacctgagactttgagagaagcacactccaaggt 10682983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 32151515 - 32151455
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||  | |||||| |||||||| |||||  |||||||| ||||||||    
T  32151515 cccaccgaaattggcactagagagaatcgaatttgaaacctttggaggagcaaactccaag 32151455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 39041958 - 39042018
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| | |||||| ||| |||||||||   |||||||| ||||||||    
T  39041958 cccaccgaaattggcaccagagagaatcgaacttgagacctctggaggagcaaactccaag 39042018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 46553037 - 46552985
Alignment:
Q  194 aaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgaga 246  Q
    ||||||||||||| ||||||||||  | |||||| |||| |||||||||||||    
T  46553037 aaactaacccacccaaattggcactagagagaatcgaatctgagaccttgaga 46552985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 342505 - 342431
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| || ||| ||||||||||||    
T  342505 aagccaaaccaacccaccgaaattggcaccgaggagaattgaacttgagaccttgcgatgagtacactccaaggt 342431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 6099484 - 6099558
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| |||||||| ||||||| |||||||||| |||  ||||||||||||||||||||||||||||||    
T  6099484 aagccaaactagcccaccgatattggcagcggggagaatcgaacctgagaccttgagaggagcacactccaaggt 6099558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 16525288 - 16525217
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaa 260  Q
    |||||||||||| |||||||||||||||||||||||||| |||  ||||||||||||||  |||||||||||    
T  16525288 aagccaaactaatccaccgaaattggcaccggggagaatcgaacctgagaccttgagagtcgcacactccaa 16525217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 3697365 - 3697439
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||   ||||||||||||||||||| |||||||||    
T  3697365 aagccaaactaacccgccgaaattggcaccgaggagaatcgaaccagagaccttgagaggagcactctccaaggt 3697439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 41908603 - 41908678
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||| |||||| |||||| |||||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||    
T  41908603 aagctaaactagcccacccaaattggcaccggggataatcgaacttgagaccttgaggaggagcacactccaaggt 41908678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 27967114 - 27967188
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||||||| |||||| |||||||||||||  ||  |||||||||||| |||||||| ||||||||    
T  27967114 aagccaaactaacccaccaaaattgccaccggggagaatctaaactgagaccttgaggggagcacaatccaaggt 27967188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 26176304 - 26176365
Alignment:
Q  202 ccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||| ||||||||||| |||||||| |||| |||||||||||||||||||||| |||||||    
T  26176304 ccaccaaaattggcaccagggagaatcgaatctgagaccttgagaggagcacaccccaaggt 26176365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 18825445 - 18825377
Alignment:
Q  195 aactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||| || |||||||||||||||||||| |||  || |||||||||||||||||||||||||| ||||    
T  18825445 aactagcctaccgaaattggcaccggggaaaatcaaacttgagaccttgagaggagcacactcctaggt 18825377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 26482203 - 26482129
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||| || ||||| ||||||||||| | ||||||| |||  ||||||||||||||||||||||||| ||||    
T  26482203 aagccaaattagcccactgaaattggcactgaggagaatcgaacctgagaccttgagaggagcacactcctaggt 26482129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 7250333 - 7250265
Alignment:
Q  195 aactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||| ||||||||||||||| |||||  ||||  || |||||| ||||||||||||||||||||||||    
T  7250333 aactagcccaccgaaattggctccgggaggaatcaaacttgagatcttgagaggagcacactccaaggt 7250265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 39273606 - 39273534
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||||||||| ||| ||||||||||| ||  |||||||||| ||| |  ||||||||||    
T  39273606 aagccaaactaacccaccgaaattcgcatcggggagaattaaaactgagaccttgggagaaatacactccaag 39273534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 25384643 - 25384572
Alignment:
Q  192 ccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||||||| |||||||||||| | | ||| |||   |||||| ||||||||||||||||||||||    
T  25384643 ccaaactaacccaccaaaattggcaccgagcataatcgaacccgagaccctgagaggagcacactccaaggt 25384572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 30359764 - 30359690
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgag-aggagcacactccaaggt 263  Q
    |||| |||||| |||||| |||||||||| ||||||||| ||| | ||||||||||| ||||||||||||||||||    
T  30359764 aagctaaactagcccacccaaattggcactggggagaatcgaaat-gagaccttgaggaggagcacactccaaggt 30359690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 8192457 - 8192517
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||| ||||||||| | | |||| |||  ||||||||||||||||||||||||||||    
T  8192457 cccaccgacattggcaccagagggaatcgaacctgagaccttgagaggagcacactccaag 8192517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 28194239 - 28194299
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| | |||||| |||  | ||||||| ||||||||||||||||||    
T  28194239 cccaccgaaattggcaccagagagaatcgaacctaagaccttaagaggagcacactccaag 28194299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 6890441 - 6890372
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaa 260  Q
    |||| |||||| |||| ||||||||| |||||| ||||||||| ||||| |||||| |||||||||||||||    
T  6890441 aagcaaaactagcccagcgaaattggtaccggg-agaattgaacttgagtccttga-aggagcacactccaa 6890372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 11138685 - 11138750
Alignment:
Q  193 caaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactcca 259  Q
    ||||||| || |||||||||| || || | |||||||||||||||||||| ||| ||||||||||||    
T  11138685 caaactagccaaccgaaattgacatcgagaagaattgaatttgagaccttaaga-gagcacactcca 11138750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 37480174 - 37480117
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactc 257  Q
    |||||| ||||||| |||||||||||| |||  ||||||||||| |||||||||||||    
T  37480174 cccacccaaattgggaccggggagaatcgaacctgagaccttgaggaggagcacactc 37480117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Original strand, 43963999 - 43964028
Alignment:
Q  234 tgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||||||||||||||||||||||    
T  43963999 tgagaccttgagaggagcacactccaaggt 43964028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 21213880 - 21213828
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagacct 241  Q
    |||| |||||| |||||| |||||||||||||||||||| |||  ||||||||    
T  21213880 aagcaaaactagcccacctaaattggcaccggggagaatcgaacctgagacct 21213828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 40136929 - 40137002
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||| |||| ||||||||||||||||||||| |||||  ||  ||||||||||||||||||||||||||||||    
T  40136929 aagccagactagcccaccgaaattggcaccggg-agaatcaaacctgagaccttgagaggagcacactccaaggt 40137002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 6530915 - 6530843
Alignment:
Q  191 gccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||  ||||||| |||||||||||||||||| |||  |||||| |||||||||||||||||| ||||    
T  6530915 gccaaactagtccaccgatattggcaccggggagaatcgaacctgagacattgagaggagcacactcctaggt 6530843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 22268899 - 22268973
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| ||||||||||||| |||| |||||||| || |||  || |||||||||||||| ||||||||||||||||    
T  22268899 aagctaaactaacccacctaaatgggcaccggagaaaatcaaacttgagaccttgagaagagcacactccaaggt 22268973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 27557609 - 27557650
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattga 230  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  27557609 aagccaaactaccccaccgaaattggcaccggggagaattga 27557650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 2203591 - 2203528
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||||| |||||||||||||||||||||||   ||||||||||| |||||||||||||| ||||    
T  2203591 cccacccaaattggcaccggggagaattgaccctgagaccttgaggaggagcacactcccaggt 2203528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 6536631 - 6536556
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||| ||| ||||||||| ||||||||||| | ||||||||||  ||||||||||| |||||||||||||| ||||    
T  6536631 aagctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggt 6536556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 34778838 - 34778771
Alignment:
Q  196 actaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| ||||||||||||||||||| ||| |||  || |||||||||||| ||||||||||| ||||||    
T  34778838 actagcccaccgaaattggcaccgtggaaaatcaaacttgagaccttgaaaggagcacactgcaaggt 34778771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 29855384 - 29855458
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||| |||| ||||||||  || |||||| |||  ||||||||| ||||||||||||| ||||||    
T  29855384 aagccaaactaacctaccgtaattggcattggcgagaatcgaacctgagaccttaagaggagcacactacaaggt 29855458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 18128608 - 18128548
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| | |||||| |||| | ||||||||| ||||||||||| ||||    
T  18128608 cccaccgaaattggcaccagagagaatcgaatctaagaccttgaaaggagcacacttcaag 18128548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 11793486 - 11793561
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||| |||||| |||||| |||||||||||||| |||||  ||  | ||||||||| |||||||||||||||||||    
T  11793486 aagctaaactagcccacccaaattggcaccgggaagaatcaaacctaagaccttgaggaggagcacactccaaggt 11793561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 28783159 - 28783096
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||||| |||||||||||| ||||||| |||  ||||||||||| |||||||||||||| ||||    
T  28783159 cccacccaaattggcaccgaggagaatcgaacatgagaccttgaggaggagcacactcccaggt 28783096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 35475542 - 35475593
Alignment:
Q  190 agccaaactaacccaccgaaattggcaccggggagaattgaatttgagacct 241  Q
    |||||||||| ||||||||||||||||||||||| ||| |||  ||||||||    
T  35475542 agccaaactagcccaccgaaattggcaccggggataatcgaacctgagacct 35475593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 16317721 - 16317647
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| |||||| ||||| |||||||||||| | |||||| |||  ||||||  |||||||||||||||| |||||    
T  16317721 aagctaaactagcccactgaaattggcaccagagagaatcgaacatgagacgctgagaggagcacactctaaggt 16317647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 5438450 - 5438478
Alignment:
Q  235 gagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||||||||||||||||||    
T  5438450 gagaccttgagaggagcacactccaaggt 5438478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 9126567 - 9126623
Alignment:
Q  207 gaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| |  | |||| ||| ||||| |||||||||||||||||||||||||    
T  9126567 gaaattggcacagatgggaatcgaacttgagtccttgagaggagcacactccaaggt 9126623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 10778778 - 10778853
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggag-aattgaatttgagaccttgaga--ggagcacactccaag 261  Q
    ||||||||||| ||| |||||||||||||||  ||| ||| ||| ||||||||||||||  ||| |||||||||||    
T  10778778 aagccaaactagcccgccgaaattggcaccgaagagaaatcgaacttgagaccttgagactggaacacactccaag 10778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 15974999 - 15974940
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||| ||||  ||| |||| ||| |||||||||||||||||||| ||||||||    
T  15974999 cccaccgaaatttgcactaggg-gaatcgaacttgagaccttgagaggagcatactccaag 15974940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 21239444 - 21239384
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| |||| |||  || |||| ||||||| |||| |||||||||||    
T  21239444 cccaccgaaattggcaccagggaaaatcaaacttgaaaccttgaaaggaacacactccaag 21239384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 41070856 - 41070796
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    ||||||||||||| ||||   | |||| ||| ||||||||||||||| |||||||||||||    
T  41070856 cccaccgaaattgacaccaaagggaatcgaacttgagaccttgagagtagcacactccaag 41070796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 16457916 - 16457846
Alignment:
Q  194 aaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||||| |||||  ||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||    
T  16457916 aaactagcccacgcaaattggcaccggggagaattgaacatgagaccttgaggaggagcacactccaaggt 16457846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 16172949 - 16173023
Alignment:
Q  189 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||| || || |||||||||| |  ||||||| |||  ||||||||||||||||||||||||||||||    
T  16172949 aagccaaactagcctactgaaattggcaactaggagaatcgaacctgagaccttgagaggagcacactccaaggt 16173023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 37421390 - 37421321
Alignment:
Q  194 aaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||| |||||| ||||| ||||| |||||||| |||| ||||||| ||||||||||| |||| |||||    
T  37421390 aaactagcccaccaaaattagcaccagggagaatcgaatctgagaccgtgagaggagcaaactctaaggt 37421321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 40330724 - 40330664
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||| ||||||| |||||   |||||||||| |||||||||||||||||||| ||||||||    
T  40330724 cccaacgaaattagcaccatagagaattgaacttgagaccttgagaggagcaaactccaag 40330664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 84912 - 84865
Alignment:
Q  212 tggcaccggggagaattgaatttgagaccttga-gaggagcacactcc 258  Q
    |||||||||||||||| ||| |||||||||||| ||||||||||||||    
T  84912 tggcaccggggagaatcgaacttgagaccttgaggaggagcacactcc 84865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 16247102 - 16247169
Alignment:
Q  196 actaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||| |||||| | ||||||||||||| | ||||||  ||||||||||| ||||||||||| ||||||    
T  16247102 actagcccaccaagattggcaccgggggggattgaacctgagaccttgataggagcacactgcaaggt 16247169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 30883175 - 30883238
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    |||||| |||||| ||| || |||||||||| |||||||||||| |||||||||||||| ||||    
T  30883175 cccacccaaattgacactggtgagaattgaacttgagaccttgaggaggagcacactcccaggt 30883238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 31669014 - 31669064
Alignment:
Q  213 ggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||||||| |||  | ||||||||||||||||| ||||||||||    
T  31669014 ggcaccggggagaatcgaacctaagaccttgagaggagcagactccaaggt 31669064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Original strand, 15485430 - 15485459
Alignment:
Q  234 tgagaccttgagaggagcacactccaaggt 263  Q
    ||||||||||||||||||||||||||||||    
T  15485430 tgagaccttgagaggagcacactccaaggt 15485459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 3315307 - 3315251
Alignment:
Q  208 aaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaaggt 263  Q
    ||||||||||| |||||||| |||  ||||||||||| ||||||| |||||||||||    
T  3315307 aaattggcacctgggagaatcgaacctgagaccttgaggaggagcgcactccaaggt 3315251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 5943893 - 5943921
Alignment:
Q  235 gagaccttgagaggagcacactccaaggt 263  Q
    |||||||||||||||||||||||||||||    
T  5943893 gagaccttgagaggagcacactccaaggt 5943921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 19145517 - 19145577
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaag 261  Q
    |||||||||||||||||| | | |||| |||   |||||||||||||||||| ||||||||    
T  19145517 cccaccgaaattggcaccagagggaatcgaaccggagaccttgagaggagcatactccaag 19145577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 17694 - 17763
Alignment:
Q  194 aaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 263  Q
    |||||| ||||| |||||||||  || ||||||| |||  ||||||||||||||||| ||||||||||||    
T  17694 aaactagcccactgaaattggcctcgaggagaatcgaacctgagaccttgagaggagaacactccaaggt 17763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 15754 - 15814
Alignment:
Q  201 cccaccgaaattggcaccggggagaattgaatttgagaccttga-gaggagcacactccaa 260  Q
    |||||| |||||||||||| |||||||  || |||||||||||| |||||||| |||||||    
T  15754 cccacccaaattggcaccgcggagaatcaaacttgagaccttgaggaggagcatactccaa 15814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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