View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4252-Insertion-15 (Length: 101)

Name: NF4252-Insertion-15
Description: NF4252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4252-Insertion-15
NF4252-Insertion-15
[»] chr8 (1 HSPs)
chr8 (5-101)||(33014497-33014593)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 3e-48
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 33014593 - 33014497
Alignment:
5 cggtggttgtcgaggagagtaacgagagaggtggcggcgggccagagctggaaggagaggccttgagatgggagtgagcgaatggtgaccgttgatt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33014593 cggtggttgtcgaggagagtaacgagagaggtggcggcgggccagagctggaaggagaggccttgagatgggagtgagcgaatggtgaccgttgatt 33014497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University