View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4252-Insertion-16 (Length: 216)
Name: NF4252-Insertion-16
Description: NF4252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4252-Insertion-16 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 47408490 - 47408271
Alignment:
| Q |
1 |
ataattccccaacttgccgaagacaaagccattgaacttcaaactttaatggaaaaattgaaggtctgtttctcaaaccagtttggctatcatgtctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47408490 |
ataattccccaacttgccgaagacaaagccattgaacttcaaactttaatggaaaaattgaaggtctgtttctcaaaccagtttggctatcatgtctttt |
47408391 |
T |
|
| Q |
101 |
ttccctttcttttgtgctaaacta----ctaaagtttgttgtgcgaggctttttcatattactaagtttttggttttgtcaattttgttgtcatttgttc |
196 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47408390 |
ttccctttcttttgtgctaaactactaactaaagtttgttgtgcgaggctttttcatattactaaatttttggttttgtcaattttgttgtcatttgttc |
47408291 |
T |
|
| Q |
197 |
tagagagatgaaatatccaa |
216 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47408290 |
tagagagatgaaatatccaa |
47408271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 47422186 - 47421977
Alignment:
| Q |
2 |
taattccccaacttgccgaagacaaagccattgaacttcaaactttaatggaaaaattgaaggtctgtttctcaaaccagtttggctatcatgtcttttt |
101 |
Q |
| |
|
|||||| ||||||| || | ||||| ||||| |||||||||||||| | | ||||||||||| ||||||||||||||||| | |||||||| |||| |
|
|
| T |
47422186 |
taattctccaacttcccaaggacaaggccatgcaacttcaaactttatttaataaattgaaggtgggtttctcaaaccagtttcaccatcatgtcctttt |
47422087 |
T |
|
| Q |
102 |
tccctttcttttgtgctaaactactaaagtttgttgtgcgaggctttttcatattactaagtttttggttttgtcaattttgttgtcatttgttctagag |
201 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
47422086 |
tccctctcttccgtgcttaactactaaagtttgttgtgcaaggcttgttcatatcactaagtttttggttttgtcaattttgttgtcattcgttatagag |
47421987 |
T |
|
| Q |
202 |
agatgaaata |
211 |
Q |
| |
|
|||||||||| |
|
|
| T |
47421986 |
agatgaaata |
47421977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 47419681 - 47419506
Alignment:
| Q |
35 |
aacttcaaactttaatggaaaaattgaaggtctgtttctcaaaccagtttggctatcatgtcttttttccctttcttttgtgctaaactactaaagtttg |
134 |
Q |
| |
|
|||||||||||||| | | ||||||||||| ||||||||| ||||||| |||||||||| ||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
47419681 |
aacttcaaactttatttaataaattgaaggtgggtttctcaatccagtttcactatcatgtcctttttccatctcttccgtgctaaactactaaagtttg |
47419582 |
T |
|
| Q |
135 |
ttgtgcgaggctttttcatattactaagtttttggttttgtcaattttgttgtcatttgttctagagagatgaaat |
210 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
47419581 |
ttgtgcaaggcttgttcatattactaagtttttggttttgtcaattttgttgtcattcgttatagagagatgaaat |
47419506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 47391316 - 47391142
Alignment:
| Q |
35 |
aacttcaaactttaatggaaaaattgaaggtctgtttctcaaaccagtttggctatcatgtcttttttccctttcttttgtgctaaactactaaagtttg |
134 |
Q |
| |
|
|||||||||||||| | | ||||||||||| ||||||||||||||||| ||||||||| ||||||||| | | ||||||||||||||||||||| |
|
|
| T |
47391316 |
aacttcaaactttatttaacaaattgaaggtgggtttctcaaaccagtttca-tatcatgtcctttttccctctatgccgtgctaaactactaaagtttg |
47391218 |
T |
|
| Q |
135 |
ttgtgcgaggctttttcatattactaagtttttggttttgtcaattttgttgtcatttgttctagagagatgaaata |
211 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
47391217 |
ttgtgcaaggctttttcatatttctaagtttttcattttgtcaatttcgttgtcatttg-tctagagagatgaaata |
47391142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 47425303 - 47425227
Alignment:
| Q |
20 |
aagacaaagccattgaacttcaaactttaatggaaaaattgaaggtctgtttctcaaaccagtttggctatcatgtc |
96 |
Q |
| |
|
|||||||||| |||||||||||||||||| | || ||||||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
47425303 |
aagacaaagcgattgaacttcaaactttatttgacaaattgaaggtgtgtttctcaaatcagtttcactatcatgtc |
47425227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 47424771 - 47424712
Alignment:
| Q |
149 |
ttcatattactaagtttttggttttgtcaattttgttgtcatttgttctagagagatgaa |
208 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47424771 |
ttcatgttactaagttttttgtcttgtcaattttgatgtcatttgttctagagagatgaa |
47424712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 46796002 - 46796049
Alignment:
| Q |
155 |
ttactaagtttttggttttgtcaattttgttgtcatttgttctagaga |
202 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
46796002 |
ttactaagctttttgttttgtcaattttcatgtcatttgttctagaga |
46796049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University