View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4252-Insertion-17 (Length: 205)
Name: NF4252-Insertion-17
Description: NF4252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4252-Insertion-17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 51351123 - 51350992
Alignment:
| Q |
71 |
gagaaacttcagccacaactgtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatatacttgcttgcacttggtgggt |
170 |
Q |
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| T |
51351123 |
gagaaacttcagccacaactgtggaaaacaaagttgtttgcatgtcacaaaagctttgttcttctacgcttcga--tatacttgcttgcacttggt-ggt |
51351027 |
T |
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| Q |
171 |
ggtgaaatcaaaggctgtgttcatgctctaggagc |
205 |
Q |
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| T |
51351026 |
ggtgaaatcaaaggctgtgttcctgctctaggagc |
51350992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 51360494 - 51360361
Alignment:
| Q |
71 |
gagaaacttcagccacaact--gtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatatacttgcttgcacttggtgg |
168 |
Q |
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| T |
51360494 |
gagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttc--aatatacttgcttgcacttggt-g |
51360398 |
T |
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| Q |
169 |
gtggtgaaatcaaaggctgtgttcatgctctaggagc |
205 |
Q |
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| T |
51360397 |
gtggtggaatcagaggttgtgttcctgctctaggagc |
51360361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 40020304 - 40020263
Alignment:
| Q |
17 |
atctataactactctttatatcaactccataaaagagatttg |
58 |
Q |
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| T |
40020304 |
atctataactactctttatatcaactccataaaagagatttg |
40020263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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