View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4252-Insertion-18 (Length: 127)
Name: NF4252-Insertion-18
Description: NF4252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4252-Insertion-18 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 5e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 5e-66
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 34415895 - 34415769
Alignment:
| Q |
1 |
tataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacattcaata |
100 |
Q |
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| T |
34415895 |
tataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacattcaata |
34415796 |
T |
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| Q |
101 |
cacttctggatgacatggtttccattc |
127 |
Q |
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| T |
34415795 |
cacttctggatgacatggtttccattc |
34415769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 155580 - 155706
Alignment:
| Q |
1 |
tataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacattcaata |
100 |
Q |
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| T |
155580 |
tataacacgacagctatatggatgagctgacaacgtcacaacttggttataaaacgttgaaacgataaacctgatttcatcctcaggtacacattcaata |
155679 |
T |
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| Q |
101 |
cacttctggatgacatggtttccattc |
127 |
Q |
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| T |
155680 |
cacttctggatgacatggtttccattc |
155706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 24139063 - 24138941
Alignment:
| Q |
5 |
acacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacattcaatacact |
104 |
Q |
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| T |
24139063 |
acacgacaaccgtatggatgggttgagagtgtcacaacttgatcgaaaaatgttgaaacaataaagtcgatcgcctcttcagggacacattcaatacatt |
24138964 |
T |
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| Q |
105 |
tctggatgacatggtttccattc |
127 |
Q |
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|||| |||||||| || |||||| |
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| T |
24138963 |
tctgaatgacatgattaccattc |
24138941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 41721387 - 41721268
Alignment:
| Q |
8 |
cggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacattcaatacacttct |
107 |
Q |
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| T |
41721387 |
cggcaaccatatggatgggtagatagtgtcacaacttgatcaaaaaaagttgagataataaaatcaattgcatcttcaggtacgcattcaatacacttct |
41721288 |
T |
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| Q |
108 |
ggatgacatggtttccattc |
127 |
Q |
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| T |
41721287 |
gaatgacatggttaccattc |
41721268 |
T |
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