View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4252-Insertion-19 (Length: 125)
Name: NF4252-Insertion-19
Description: NF4252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4252-Insertion-19 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 43; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 20543911 - 20543869
Alignment:
| Q |
83 |
gttcaagctatcatttttaaaacttaatcctttgtaaaagtta |
125 |
Q |
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| T |
20543911 |
gttcaagctatcatttttaaaacttaatcctttgtaaaagtta |
20543869 |
T |
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Target: chr4 (Bit Score: 43; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 4267789 - 4267747
Alignment:
| Q |
83 |
gttcaagctatcatttttaaaacttaatcctttgtaaaagtta |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4267789 |
gttcaagctatcatttttaaaacttaatcctttgtaaaagtta |
4267747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 21910553 - 21910511
Alignment:
| Q |
83 |
gttcaagctatcatttttaaaacttaatcctttgtaaaagtta |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21910553 |
gttcaagctatcatttttaaaacttaatcctttgtaaaagtta |
21910511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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