View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4252_high_3 (Length: 477)
Name: NF4252_high_3
Description: NF4252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4252_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 68 - 444
Target Start/End: Complemental strand, 33178933 - 33178556
Alignment:
| Q |
68 |
tcctacatatacataaccggaccaccggggaacttgtatccagtcgatgagaatttcagcggagcaattcatcgccaccaccggagcttcgcggtcttat |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33178933 |
tcctacatatacataaccggaccaccggggaacttgtatccagtcgatgagaatttcagcggagcaattcatcgccaccaccggagcttcacggtcttat |
33178834 |
T |
|
| Q |
168 |
tgttgccatttgcggttgctcttttgggaataatttctttttagcgaccatgcattccaaagacacggtggaagaagtattttacggtttatatagttat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33178833 |
tgttgccatttgcggttgctcttttgggaataatttctttttagcgaccatgcattccaaagacacggtggaagaagtattttacggtttatatagttat |
33178734 |
T |
|
| Q |
268 |
aattattaagagtgtcaatgttttacataaggtaacatgagaattgtgtattcggttattatttgacacgtaa-ttctgtttctgttccatattatgtaa |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33178733 |
aattattaagagtgtcaatgttttacataaggtaacatgagaattgtgtattcggttattatttgacacgtaagttctgtttctgttccatattatgtaa |
33178634 |
T |
|
| Q |
367 |
tcacaatttgttctatattaacaattttaaattaaattgttatgtaactttctataaattggccatggatgctttgtg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33178633 |
tcacaatttgttctatattaacaattttaaattaaattgttatgtaactttctataaattggccatggatgctttgtg |
33178556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University