View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4252_high_5 (Length: 400)
Name: NF4252_high_5
Description: NF4252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4252_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 52401769 - 52401397
Alignment:
| Q |
19 |
ctccaacagatataacggtgtctgaagagccgtgaactgtaaggaccctgtcatatgttacatgatttgagattaacacttctatgcatagttaaagtat |
118 |
Q |
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| T |
52401769 |
ctccaacagatataacggtgtctgaagaaccgtgaactgtaaggaccctgtcatatgttacatgatttgagattaacacttctatgcatagttaaagtat |
52401670 |
T |
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| Q |
119 |
catatactagtgatat-----acttgactagggagtaaaccaaaattgagattaaattaataatcttaatttaaaatatcaaaagtgattaggcatttta |
213 |
Q |
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| T |
52401669 |
catatactagtgatatcatccacttgactagggagtaaaccaaaattgagattaaattaataatcttaatttaaaatatcaaaagtgattaggcatttta |
52401570 |
T |
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| Q |
214 |
tacatgaaggggagaaatgacggattttcttatgattctaccaaacccaaccttgttcaattttatgaacgtacagaatttcccaaatttttgaagattt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52401569 |
tacatgaaggggagaaatgacggattttcttatgattctaccaaacccaaccttattcaattttatgaacgtacagaatttcccaaatttttgaagattt |
52401470 |
T |
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| Q |
314 |
tcaatacccagacaaatggaaggaaaatcattatttaaaccctcattttcttcccttttctccctttcccctt |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52401469 |
tcaatacccagacaaatggaaggaaaatcattatttaaaccctcattttcttcccttttctccctttcccctt |
52401397 |
T |
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