View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4252_high_7 (Length: 268)
Name: NF4252_high_7
Description: NF4252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4252_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 1372447 - 1372221
Alignment:
| Q |
11 |
caaaggtcataaaatacttacccattaccctatatttggtaccacataatatttgcttcatttattattacacaaccatagaagaaatttctttattatc |
110 |
Q |
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| T |
1372447 |
caaaggtcataaaatacttacccattaccctatgcttggtaccacataatatttgcttcatttattattacacaaccatagaagaaatttctttattatc |
1372348 |
T |
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| Q |
111 |
atatccaacacaattgcaataggcttttattattattatccatgaaaatgacaccccttaaaatcattatttcatccagcctaaaagcttcacaagattc |
210 |
Q |
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| T |
1372347 |
atatccaacacaagtgcaataggctttta------ttatccatgaaaatgacaccccttaaaatcattatttcatccagcctaaaagc---------ttc |
1372263 |
T |
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| Q |
211 |
acaattacctcatatatacagaaccctttttcatgcaataat |
252 |
Q |
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| T |
1372262 |
acaattacctcatatatacagaaccctttttcatgcaataat |
1372221 |
T |
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