View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4252_low_1 (Length: 1053)
Name: NF4252_low_1
Description: NF4252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4252_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 995; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 995; E-Value: 0
Query Start/End: Original strand, 9 - 1039
Target Start/End: Original strand, 9076348 - 9077378
Alignment:
| Q |
9 |
gacatcatcagaaaatagaaattaccattctttgccataaacatttaacaattttttgcctaactacacatttagaaatgaatcagtacctcagtagcta |
108 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9076348 |
gacaacataagaaaatagaaattaccattctttgccataaacatttaacaattttttgcctaactacacatttagaaatgaatcagtacctcagtagcca |
9076447 |
T |
|
| Q |
109 |
ctgaaaggtgacccttccttccacttttatcaccctgcaacttcatctgcagaatttgaatgtagataaatcaagtactatataacattgacaatttaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9076448 |
ctgaaaggtgacccttccttccacttttatcaccctgcaacttcatctgcagaatttgaatgtagataaatcaagtactatataacattgacaatttaaa |
9076547 |
T |
|
| Q |
209 |
actttaatccttctttgcagtgattaatcacacaaatcagatgtcttaacaaatagaaaaatcaagactgctgcttgttgtaaatttgttaccttgtaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9076548 |
actttaatccttctttgcagtgattaatcacacaaatctgatgtcttaacaaatagaaaaatcaagactgttgcttgttgtaaatttgttaccttgtaat |
9076647 |
T |
|
| Q |
309 |
tgcgcttatgaacattaaatccgagaggtttggcagcctcctcaatcttagaaataatttcatttgcaggacgctgtgaagtgaaatgtgtttcgcgctt |
408 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9076648 |
tgcgcttgtgaacattaaatccgagaggtttggcagcctcctcaatcttagaaataatttcatttgcaggacgctgtgaagtgaaatgtgtttcgcgctt |
9076747 |
T |
|
| Q |
409 |
tacaaccccctaggtgtcaatgagatcaaattaaatggagaaacaagcataattagctagaaagaataatcatagccatcaatattttgttatctaatta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9076748 |
tacaaccccctaggtgtcaatgagatcaaattaaatggagaaacaagcataattagctagaaagaataatcatagccatcgatattttgttatctaatta |
9076847 |
T |
|
| Q |
509 |
ctactaaaaaggaatcgagtatattttccaacgcatactactttaaaatgttgaatagcacatactaattttttcacacaccttttccttctcaaacaaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9076848 |
ctactaaaaaggaatcgagtatattttccaacgcatactactttaaaatgttgaatagcacatactaattttttcacacaccttttccttctcaaacaaa |
9076947 |
T |
|
| Q |
609 |
ttgccaagattgaagctgtccgatctagaaataagctcaaaagcattcattgacaccggtttctctttggtctccgtcacaagattttcctacatatcaa |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9076948 |
ttgccaagattgaagctgtccgatctagaaataagctcaaaagcattcattgacaccggtttctctttggtctccgtcacaagattttcctacatatcaa |
9077047 |
T |
|
| Q |
709 |
agaaaagttattgattagttgtatccaaggttttacattgcttctgaaatcacattgtgatacttaatattgggaaatattatggttaaagacggttaat |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9077048 |
agaaaagttattgattagttgtatccaaggttttacattgcttctgaaatcacattgtgatacttaatatagggaaatattatggttaaagacggttaat |
9077147 |
T |
|
| Q |
809 |
gaggccacatcgcgattgcaatccaatcacggagacatcaaaaagcctttgttgtatctatgtgcattgtgttcctataatttatgcaagatatttaaca |
908 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9077148 |
gaggccacatcgcgattgcaatccaatcacggagacatcaaaaagcctttgttgtatctatgtgcattgtgttcctataatttatgcaagatatttaaca |
9077247 |
T |
|
| Q |
909 |
gacctattgggaaaaacgcaataaacagtaccttggaatcattgaaagcagcagcaacatcatctacattgacatcttcctcggtaaaaaatgccggctt |
1008 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9077248 |
gacctattgggaaaaacgcaataaacagtaccttggaatcattgaaagcagcagcaacatcatctacattgacatcttcctcggtaaaaaatgccggctt |
9077347 |
T |
|
| Q |
1009 |
gtatccttttctgaaccattcatgttccaag |
1039 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
9077348 |
gtatccttttctgaaccattcatgttgcaag |
9077378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 85 - 1039
Target Start/End: Original strand, 9085189 - 9086160
Alignment:
| Q |
85 |
aatgaatcagtacctcagtagctactgaaaggtgacccttccttccacttttatcaccctgcaacttcatctgcagaatttgaatgtagataaa-tcaag |
183 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
9085189 |
aatgaatcagtacctcagtagccactgaaaggtgacccttccttccacttttatcaccctgcagcttcatctgcataattaaaatgtagataaggtcaag |
9085288 |
T |
|
| Q |
184 |
t-actatataacattgacaatttaaaacttta-atccttctttgcagtgattaatcacacaaatcagatgtctta--acaaatagaaaaatcaagactgc |
279 |
Q |
| |
|
| ||| ||| | ||| ||||| |||||||| |||||||||| |||||||||||||||| ||| | | |||||| |||||| || |||| |||||| |
|
|
| T |
9085289 |
ttactgtatgatattaacaatctaaaacttcggatccttctttacagtgattaatcacacgaatgaaacgtcttataacaaattgagaaatgaagactag |
9085388 |
T |
|
| Q |
280 |
tgcttgttgtaaatttgttaccttgtaattgcgcttatgaacattaaatccgagaggtttggcagcctcctcaatcttagaaataatttcatttgcagga |
379 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9085389 |
tgcttgttgttaattagttaccttgtaattgcgcttgtgaacattaaatccgagaggtttggcagcctcctcaatcttagacataatttcatttgcagga |
9085488 |
T |
|
| Q |
380 |
cgctgtgaagtgaaatgtgtttcgcgctttacaaccccctaggt-gtcaatgagatcaaattaaatggagaaacaa-gcataattagctagaaagaataa |
477 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || || ||| || ||||| ||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
9085489 |
cgctgcgaagtgaaatgtgtttcgcgctttacaaccccctatgttgtaaataagtacaaataaaatggagaaaaaaagcatagttagctagaaagaataa |
9085588 |
T |
|
| Q |
478 |
tcatagccatcaatattttgttatctaattactactaaaaagga---atcgag-tatattttccaacgcatactactttaaaatgttgaatagcacatac |
573 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| ||||| ||| || |||||||| ||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
9085589 |
tcataatcatcaatattttgttagctaattactactaataaggaggaatcaaggtatattttgcaaagcatgccactttaaaatgttgaatagcacataa |
9085688 |
T |
|
| Q |
574 |
taattttttcacacaccttttccttctcaaacaaattgccaagattgaagctgtccgatctagaaataagctcaaaagcattcattgacaccggtttctc |
673 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9085689 |
taattttttcacacaccttttccctctcaaacaaattgtcaagattgaagctttccgatctagaaataagctcaaaagcattcattgacaccggtttctc |
9085788 |
T |
|
| Q |
674 |
tttggtctccgtcacaagattttcctacatatcaaagaaaagttattgattagttgtatccaaggttttacattgcttctgaaatcacattgtgatactt |
773 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
9085789 |
tttggtctcggtcacgagattttcctacatatcaaagaaaagttattgattagttgtatccaaggttttacattgcttctgcaatcacatcgcgatactt |
9085888 |
T |
|
| Q |
774 |
aatattgggaaatattatggttaaagacggttaatgaggccacatcgcgattgcaatccaatcacggagacatcaaaaagcctttgttgtatctatgtgc |
873 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
9085889 |
aatattgggaaaaaatttggttaaagacggttaatgaggccacatcacgattgcaataaaatcatggagacatcagaaagcctttgctgtatctatgtgc |
9085988 |
T |
|
| Q |
874 |
attgtgttcctataatttatgcaagatatttaacagacctattggga---aaaacgcaataaacagtaccttggaatcattgaaagcagcagcaacatca |
970 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||| |||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
9085989 |
attgtgttcctataatatatgcaagatatttaatagacctattgagaaagaaaacgcaatagacagtaccctagaatcattgaaagctgcagcaacatca |
9086088 |
T |
|
| Q |
971 |
tctacattgaca---tcttcctcggtaaaaaatgccggcttgtatccttttctgaaccattcatgttccaag |
1039 |
Q |
| |
|
|| ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
9086089 |
tccacattgacatcctcttcctcggtaaaacatgccggcttgtatccttttctaaaccattcatcttccaag |
9086160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 9085126 - 9085155
Alignment:
| Q |
28 |
aattaccattctttgccataaacatttaac |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9085126 |
aattaccattctttgccataaacatttaac |
9085155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 85 - 1039
Target Start/End: Original strand, 6416393 - 6417364
Alignment:
| Q |
85 |
aatgaatcagtacctcagtagctactgaaaggtgacccttccttccacttttatcaccctgcaacttcatctgcagaatttgaatgtagataaa-tcaag |
183 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
6416393 |
aatgaatcagtacctcagtagccactgaaaggtgacccttccttccacttttatcaccctgcagcttcatctgcataattaaaatgtagataaggtcaag |
6416492 |
T |
|
| Q |
184 |
t-actatataacattgacaatttaaaacttta-atccttctttgcagtgattaatcacacaaatcagatgtctta--acaaatagaaaaatcaagactgc |
279 |
Q |
| |
|
| ||| ||| | ||| ||||| |||||||| |||||||||| |||||||||||||||| ||| | | |||||| |||||| || |||| |||||| |
|
|
| T |
6416493 |
ttactgtatgatattaacaatctaaaacttcggatccttctttacagtgattaatcacacgaatgaaacgtcttataacaaattgagaaatgaagactag |
6416592 |
T |
|
| Q |
280 |
tgcttgttgtaaatttgttaccttgtaattgcgcttatgaacattaaatccgagaggtttggcagcctcctcaatcttagaaataatttcatttgcagga |
379 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6416593 |
tgcttgttgttaattagttaccttgtaattgcgcttgtgaacattaaatccgagaggtttggcagcctcctcaatcttagacataatttcatttgcagga |
6416692 |
T |
|
| Q |
380 |
cgctgtgaagtgaaatgtgtttcgcgctttacaaccccctaggt-gtcaatgagatcaaattaaatggagaaacaa-gcataattagctagaaagaataa |
477 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || || ||| || ||||| ||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
6416693 |
cgctgcgaagtgaaatgtgtttcgcgctttacaaccccctatgttgtaaataagtacaaataaaatggagaaaaaaagcatagttagctagaaagaataa |
6416792 |
T |
|
| Q |
478 |
tcatagccatcaatattttgttatctaattactactaaaaagga---atcgag-tatattttccaacgcatactactttaaaatgttgaatagcacatac |
573 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| ||||| ||| || |||||||| ||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
6416793 |
tcataatcatcaatattttgttagctaattactactaataaggaggaatcaaggtatattttgcaaagcatgccactttaaaatgttgaatagcacataa |
6416892 |
T |
|
| Q |
574 |
taattttttcacacaccttttccttctcaaacaaattgccaagattgaagctgtccgatctagaaataagctcaaaagcattcattgacaccggtttctc |
673 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6416893 |
taattttttcacacaccttttccctctcaaacaaattgtcaagattgaagctttccgatctagaaataagctcaaaagcattcattgacaccggtttctc |
6416992 |
T |
|
| Q |
674 |
tttggtctccgtcacaagattttcctacatatcaaagaaaagttattgattagttgtatccaaggttttacattgcttctgaaatcacattgtgatactt |
773 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
6416993 |
tttggtctcggtcacgagattttcctacatatcaaagaaaagttattgattagttgtatccaaggttttacattgcttctgcaatcacatcgcgatactt |
6417092 |
T |
|
| Q |
774 |
aatattgggaaatattatggttaaagacggttaatgaggccacatcgcgattgcaatccaatcacggagacatcaaaaagcctttgttgtatctatgtgc |
873 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
6417093 |
aatattgggaaaaaatttggttaaagacggttaatgaggccacatcacgattgcaataaaatcatggagacatcagaaagcctttgctgtatctatgtgc |
6417192 |
T |
|
| Q |
874 |
attgtgttcctataatttatgcaagatatttaacagacctattggga---aaaacgcaataaacagtaccttggaatcattgaaagcagcagcaacatca |
970 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||| |||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
6417193 |
attgtgttcctataatatatgcaagatatttaatagacctattgagaaagaaaacgcaatagacagtaccctagaatcattgaaagctgcagcaacatca |
6417292 |
T |
|
| Q |
971 |
tctacattgaca---tcttcctcggtaaaaaatgccggcttgtatccttttctgaaccattcatgttccaag |
1039 |
Q |
| |
|
|| ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
6417293 |
tccacattgacatcctcttcctcggtaaaacatgccggcttgtatccttttctaaaccattcatcttccaag |
6417364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 6416330 - 6416359
Alignment:
| Q |
28 |
aattaccattctttgccataaacatttaac |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6416330 |
aattaccattctttgccataaacatttaac |
6416359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University