View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4252_low_7 (Length: 356)
Name: NF4252_low_7
Description: NF4252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4252_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 39311685 - 39311391
Alignment:
| Q |
18 |
catatatgtttgatgattaacaatattctgcgcctgcagagacctctgcattggacagctgaatgcaaatgcatagagttgaggaataagtccgcgagcg |
117 |
Q |
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| T |
39311685 |
catatatgtctgatgattaacaatattctgcgcctgcgaagacctctgaattggacagctgaatgcaaatgcatagagttgaggaataagtccgcgagcg |
39311586 |
T |
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| Q |
118 |
aacatttgaccttgtgcagcaatgctctctgtctgccccatggcttttagaaaatctccagagaaccaatagagaaatgtgagagtcactgctgcaccaa |
217 |
Q |
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| T |
39311585 |
aacatttgaccttgtgcagcaatgctctctgtctgccccatggcttttagaaaatctccagagaaccaatagagaaatgtgagagtcactgctgcaccaa |
39311486 |
T |
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| Q |
218 |
aatgtaagatgatttctctctgcaatgtgatgcacattgctgcatgttttttggctccataagcttgtccacacacagtttgcactgcacttgtc |
312 |
Q |
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| T |
39311485 |
aatgtaagatgatttctctctgcaatgtgatgcacattgctgcatgttttttggctccataagcttgtccacacacagtttgcactgcacttgtc |
39311391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 32 - 310
Target Start/End: Complemental strand, 39316148 - 39315870
Alignment:
| Q |
32 |
gattaacaatattctgcgcctgcagagacctctgcattggacagctgaatgcaaatgcatagagttgaggaataagtccgcgagcgaacatttgaccttg |
131 |
Q |
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| T |
39316148 |
gattaacaatgttctgcgcttggagaaacctctgcattggacagctgaatgcaaatgcgtagagttgcggaataagtccacgagcgaacacttgaccttg |
39316049 |
T |
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| Q |
132 |
tgcagcaatgctctctgtctgccccatggcttttagaaaatctccagagaaccaatagagaaatgtgagagtcactgctgcaccaaaatgtaagatgatt |
231 |
Q |
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| T |
39316048 |
cacggctatgctctctgtctgtcctatgacttttagaaaatctccagagaaccaatagagaaatgtgagaatcactgctgcaccaaaatgtaagatgatt |
39315949 |
T |
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| Q |
232 |
tctctctgcaatgtgatgcacattgctgcatgttttttggctccataagcttgtccacacacagtttgcactgcacttg |
310 |
Q |
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| T |
39315948 |
gctctctgcaatgttatgcacattgctgcatgctttttggctccataagcttgtccacacacagtttgcactgcacttg |
39315870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 36 - 310
Target Start/End: Original strand, 38136994 - 38137268
Alignment:
| Q |
36 |
aacaatattctgcgcctgcagagacctctgcattggacagctgaatgcaaatgcatagagttgaggaataagtccgcgagcgaacatttgaccttgtgca |
135 |
Q |
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| T |
38136994 |
aacaatgttctgtgcttgaagaaacctctgcaagggacagctgaatgcaaatgcatagagttgaggaataagtccatgagcgaacacttgaccttgcacg |
38137093 |
T |
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| Q |
136 |
gcaatgctctctgtctgccccatggcttttagaaaatctccagagaaccaatagagaaatgtgagagtcactgctgcaccaaaatgtaagatgatttctc |
235 |
Q |
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| |||||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||| | ||| |
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| T |
38137094 |
gttatgctctccgtctgtcctatgacttttagaaaatctccggagaaccaatagagaaatgttagaatgactgctgcaccaaaatgtaagatgaatgctc |
38137193 |
T |
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| Q |
236 |
tctgcaatgtgatgcacattgctgcatgttttttggctccataagcttgtccacacacagtttgcactgcacttg |
310 |
Q |
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| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
38137194 |
tttgcaaagtgatgcacattgctgcatgttttttggctccataagcttgtccacatacattttgcactgcacttg |
38137268 |
T |
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