View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4253-Insertion-4 (Length: 163)
Name: NF4253-Insertion-4
Description: NF4253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4253-Insertion-4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 8e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 8e-81
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 30908672 - 30908831
Alignment:
| Q |
4 |
ataaccatgtatatgtaattaatttaacatgcctgccaaccagcttcaatggtgttggaatttctaccagtgacgagccatatttgagacaagctgaatt |
103 |
Q |
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| T |
30908672 |
ataaccatgtatatgtaattaatttaacatacctgccaaccagcttcaatggtgttggcatttctaccagtgacgagccatatttgagacaagctgaatt |
30908771 |
T |
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| Q |
104 |
ctttttcaccttccacatgtggggaccacaaatttattgtagcctttgctccatagtatc |
163 |
Q |
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| T |
30908772 |
ctttttcaccttccacatgtggggaccacaaatttattgtagcctttgctccatagtatc |
30908831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 30918781 - 30918926
Alignment:
| Q |
15 |
tatgtaattaatttaacatgcctgccaaccagcttcaatggtgttggaatttctaccagtgacgagccatatttgagacaagctgaattctttttcacct |
114 |
Q |
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| T |
30918781 |
tatgtaattaatt-aacatgcctgccaaccagcttcaatggtgttggaatttctaccggtcgtcagccatatttgagacaagctgaattctttttcacct |
30918879 |
T |
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| Q |
115 |
tccacatgtggggaccacaaatttattgtagcctttgctccatagta |
161 |
Q |
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| T |
30918880 |
tccacatgtggggaccacaaatttattgtagcctttgctccatagta |
30918926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 30928627 - 30928761
Alignment:
| Q |
29 |
aacatgcctgccaaccagcttcaatggtgttggaatttctaccagtgacgagccatatttgagacaagctgaattctttttcaccttccacatgtgggga |
128 |
Q |
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| T |
30928627 |
aacatgcctgccaaccagcttcaatggtgttctcatttccattggcgaggacccatatttgagacaagctgaattcattttcatcttctacatgtggagc |
30928726 |
T |
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| Q |
129 |
ccacaaatttattgtagcctttgctccatagtatc |
163 |
Q |
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| T |
30928727 |
ccacaaatttattgtagcctttgctccatagtatc |
30928761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.0000000009; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 29254494 - 29254462
Alignment:
| Q |
27 |
ttaacatgcctgccaaccagcttcaatggtgtt |
59 |
Q |
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| T |
29254494 |
ttaacatgcctgccaaccagcttcaatggtgtt |
29254462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 29364776 - 29364704
Alignment:
| Q |
85 |
atttgagacaagctgaattctttttcaccttccacatgtggggaccacaaatttattgtagcctttgctccat |
157 |
Q |
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| T |
29364776 |
atttgagccaagctgaattcatttggactttccacttggggggcccacacgtttattgtagcctttgctccat |
29364704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 29234718 - 29234684
Alignment:
| Q |
25 |
atttaacatgcctgccaaccagcttcaatggtgtt |
59 |
Q |
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| T |
29234718 |
atttagcatgcctgccaaccagcttcaatggtgtt |
29234684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 29246207 - 29246114
Alignment:
| Q |
69 |
accagtgacgagccatatttgagacaagctgaattctttttcaccttccacatgtggggaccacaaatttattgtagcctttgctccatagtat |
162 |
Q |
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| T |
29246207 |
accagagacgatccatatttgacccaagctgaattcatttgggctttcaacatggggggcccacacgtttattatagcctgtgctccatagtat |
29246114 |
T |
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