View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4253-Insertion-7 (Length: 132)
Name: NF4253-Insertion-7
Description: NF4253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4253-Insertion-7 |
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| [»] chr4 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 42751697 - 42751574
Alignment:
| Q |
9 |
aaaatttcaaaccttttgcagcaacaacaaaaaacaacatcggaggtcatgtgttggattcgtcacaagaagaagcaactactcatgcatatggtgcagg |
108 |
Q |
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| T |
42751697 |
aaaatttcaaaccttttgcagcaacaacaaaagacaacatcggaggccatgtgttggattcatcacaagaagaagcaactcctcatgcatatggtgcagg |
42751598 |
T |
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| Q |
109 |
gcacattcgacctaatcttgcagc |
132 |
Q |
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| T |
42751597 |
gcacgttcgacctaatcttgcagc |
42751574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 42761159 - 42761036
Alignment:
| Q |
9 |
aaaatttcaaaccttttgcagcaacaacaaaaaacaacatcggaggtcatgtgttggattcgtcacaagaagaagcaactactcatgcatatggtgcagg |
108 |
Q |
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| T |
42761159 |
aaaatttcaaaccttttgcagcaacgacaaaaaacaacatcggaggtcatgtgttggattcatcacaagaagaagcaactcctaatgcatatggtgcagg |
42761060 |
T |
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| Q |
109 |
gcacattcgacctaatcttgcagc |
132 |
Q |
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| T |
42761059 |
gcacgttcgacctaatcttgcagc |
42761036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 42742338 - 42742218
Alignment:
| Q |
9 |
aaaatttcaaaccttttgcagcaacaacaaaaaacaacatcggaggtcatgtgttggattcgtcacaagaagaagcaactactcatgcatatggtgcagg |
108 |
Q |
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| T |
42742338 |
aaaatttcaaaccttttgcagcaacgacaaaaaacaacatcggaggtcatgtgttggattcatcacaagaagaagcaactcctaatgcatatggtgcagg |
42742239 |
T |
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| Q |
109 |
gcacattcgacctaatcttgc |
129 |
Q |
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| T |
42742238 |
gcacgttcgacctaatcttgc |
42742218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 2e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 23042161 - 23042284
Alignment:
| Q |
9 |
aaaatttcaaaccttttgcagcaacaacaaaaaacaacatcggaggtcatgtgttggattcgtcacaagaagaagcaactactcatgcatatggtgcagg |
108 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||||||||| || |||||||||||||||| |
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| T |
23042161 |
aaaatttcaaaccttttgcagcaacaacaaaagacaacatcggaggtcatttgttggattcatcgcaagaagaagcaactcctaatgcatatggtgcagg |
23042260 |
T |
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| Q |
109 |
gcacattcgacctaatcttgcagc |
132 |
Q |
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|||| ||||||||||||||||||| |
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| T |
23042261 |
gcacgttcgacctaatcttgcagc |
23042284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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