View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4253-Insertion-8 (Length: 278)
Name: NF4253-Insertion-8
Description: NF4253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4253-Insertion-8 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 7669138 - 7669419
Alignment:
| Q |
1 |
tcatcatgtactacataatgggccattgcagaaatgatcaaaaacccaagaatcttagctcaagttcaacaagaattggacaatgttgtgggccaagata |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7669138 |
tcatcaagtactacataatgggccattgcaaaaatgatcaaaaacccaagaatcttagctcaagttcaacaagaattggacaatgttgtgggccgagata |
7669237 |
T |
|
| Q |
101 |
ggaatgtg-aaagatgacatacctaacctaccttacctacaagtagtgat-aaagaaacatttcgtttgcacccatcaacacctctttccctcccacgaa |
198 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7669238 |
ggaacgtgaaaagatgacatacctaacctaccttacctacaaacagtgataaaagaaacatttcgcttgcacccatcaacacctctttccctcccacgaa |
7669337 |
T |
|
| Q |
199 |
ttgcatctgaaagttgtgagatttttgggta-cacattcc-aagggttcaactcttttggttaatgtatgagccattgctcg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7669338 |
ttgcatctgaaagttgtgagatttttgggtaccacgttccaaagagttcaactcttttggttaatgtatgggccattgctcg |
7669419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 7620437 - 7620170
Alignment:
| Q |
17 |
aatgggccattgcagaaatgatcaaaaacccaagaatcttagctcaagttcaacaagaattggacaatgttgtgggccaagataggaatgtgaaagatga |
116 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| || |
|
|
| T |
7620437 |
aatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcaacaagaattggacaatgttgtgggtcgagataggaacgtgaaagaaga |
7620338 |
T |
|
| Q |
117 |
c---atacctaacctaccttacctacaagtagtgataaa-gaaacatttcgtttgcacccatcaacacctctttccctcccacgaattgcatctgaaagt |
212 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7620337 |
cgacatacctaacctaccttacctacaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgcatctgaaagt |
7620238 |
T |
|
| Q |
213 |
tgtgagatttttgggta-cacattcc-aagggttcaactcttttggttaatgtatgagccattgctcg |
278 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
7620237 |
tgtgagatttttgggtaccacattccaaagggttcaactcttttggtcaatgtatgggccatcgctcg |
7620170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 7663455 - 7663722
Alignment:
| Q |
17 |
aatgggccattgcagaaatgatcaaaaacccaagaatcttagctcaagttcaacaagaattggacaatgttgtgggccaagataggaatgtgaaagatga |
116 |
Q |
| |
|
||||||||||||||||| | || |||||||||||| ||||| |||| ||| ||||||| ||||| ||||||||| |||||||| |||||||| || |
|
|
| T |
7663455 |
aatgggccattgcagaattaattcgaaacccaagaattctagctaaagtccaagaagaattagacaaagttgtgggcagtgataggaacgtgaaagaaga |
7663554 |
T |
|
| Q |
117 |
c---atacctaacctaccttacctacaagtagtgataaa-gaaacatttcgtttgcacccatcaacacctctttccctcccacgaattgcatctgaaagt |
212 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||| ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7663555 |
cgacatacctaacctaccttacctacaagcagtgataaaagaaactttccgcttgcatccatcaacacctctttccctcccacgaattgcatctgaaagt |
7663654 |
T |
|
| Q |
213 |
tgtgagatttttgggta-cacattcc-aagggttcaactcttttggttaatgtatgagccattgctcg |
278 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
7663655 |
tgtgagatttttgggtaccacattccaaagggttcaactcttttggttaatgtatgggccatcgctcg |
7663722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 127 - 278
Target Start/End: Original strand, 7682807 - 7682961
Alignment:
| Q |
127 |
ctaccttacctacaagtagtgataaa-gaaacatttcgtttgcacccatcaacacctctttccctcccacgaattgcatctgaaagttgtgagatttttg |
225 |
Q |
| |
|
||||||||||| |||| |||| |||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7682807 |
ctaccttaccttcaagcagtggtaaaagaaacatttcgcttgcatccatctacacctctttccctcccgcgaattgcatctgaaagttgtgagatttttg |
7682906 |
T |
|
| Q |
226 |
ggta-cacattcc-aagggttcaactcttttggttaatgtatgagccattgctcg |
278 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
7682907 |
ggtaccacattccaaaggattcaactcttttggtaaatgtatgggccatagctcg |
7682961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University