View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4253_high_1 (Length: 391)

Name: NF4253_high_1
Description: NF4253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4253_high_1
NF4253_high_1
[»] chr2 (9 HSPs)
chr2 (15-373)||(27724477-27724835)
chr2 (15-337)||(27735719-27736041)
chr2 (165-331)||(27717303-27717470)
chr2 (170-219)||(7435557-7435606)
chr2 (289-329)||(34324900-34324940)
chr2 (170-219)||(7524386-7524435)
chr2 (163-219)||(16920702-16920758)
chr2 (139-225)||(27595668-27595754)
chr2 (287-331)||(7429458-7429502)
[»] chr8 (5 HSPs)
chr8 (15-337)||(14682135-14682451)
chr8 (282-329)||(3368283-3368330)
chr8 (289-329)||(4027476-4027516)
chr8 (282-329)||(27183523-27183570)
chr8 (292-329)||(31135480-31135517)
[»] chr1 (4 HSPs)
chr1 (165-222)||(19225744-19225801)
chr1 (165-237)||(19221209-19221281)
chr1 (290-327)||(344684-344721)
chr1 (178-219)||(344828-344869)
[»] chr6 (7 HSPs)
chr6 (275-333)||(23216413-23216471)
chr6 (282-331)||(29130872-29130921)
chr6 (164-219)||(32745195-32745250)
chr6 (162-219)||(32961060-32961117)
chr6 (282-334)||(29012453-29012505)
chr6 (281-329)||(29152571-29152619)
chr6 (277-329)||(29299627-29299679)
[»] chr3 (1 HSPs)
chr3 (275-329)||(2703336-2703390)
[»] chr5 (8 HSPs)
chr5 (289-329)||(30651131-30651171)
chr5 (289-329)||(31777477-31777517)
chr5 (161-220)||(37512600-37512659)
chr5 (163-220)||(32642642-32642699)
chr5 (164-213)||(42782935-42782984)
chr5 (275-328)||(28994611-28994664)
chr5 (164-213)||(41227659-41227708)
chr5 (164-220)||(42565277-42565333)
[»] scaffold0129 (2 HSPs)
scaffold0129 (282-329)||(17603-17650)
scaffold0129 (282-329)||(33999-34046)
[»] chr4 (2 HSPs)
chr4 (178-220)||(4877550-4877592)
chr4 (154-219)||(48742276-48742341)
[»] chr7 (3 HSPs)
chr7 (289-329)||(25627762-25627802)
chr7 (282-329)||(42445889-42445936)
chr7 (164-219)||(42446026-42446081)
[»] scaffold0831 (1 HSPs)
scaffold0831 (304-332)||(1777-1805)
[»] scaffold0054 (1 HSPs)
scaffold0054 (163-219)||(33777-33833)


Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 373
Target Start/End: Original strand, 27724477 - 27724835
Alignment:
Q  15 caaagggaaaaagagtggtaacgggcacctcagtggccaggttaaaagacaccacaaatgtttcacttggttgacgatatgtttttccccaccaatgaca 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27724477 caaagggaaaaagagtagtaacgggcacctcagtggccaggttaaaagacaccacaaatgtttcacttggttgacgatatgtttttccccaccaatggca 27724576  T
Q  115 aaccccatttaagtacaccatagaaccttccgaagtcaaataacgttgtggcatatcaacataaagtttcttccaagagttacttcttagactatatata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27724577 aaccccatttaagtacaccatagaaccttccgaagtcaaataacgttgtggcatatcaacataaagttttttccaagagttacttcttagactatatata 27724676  T
Q  215 tcccaatagggaccgggcggtgcaacttgccactcatcttcacaacctccaatataaacaacatattgaatgaccttatagtcatctcgaacatggtcat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27724677 tcccaatagggaccgggcggtgcaacttgccactcatcttcacaacctccaatataaacaacatattgaatgaccttgtagtcatctcgaacatggtcat 27724776  T
Q  315 aaccaaatccatgaatattaaaaataggttcaaattcatagtacatcctagccttattt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27724777 aaccaaatccatgaatattaaaaataggttcaaattcatagtacatcctagccttattt 27724835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 27735719 - 27736041
Alignment:
Q  15 caaagggaaaaagagtggtaacgggcacctcagtggccaggttaaaagacaccacaaatgtttcacttggttgac------gatatgtttttccccacca 108  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||   |      ||||||| |||||||||||    
T  27735719 caaagggaaagagagtggtaacaggcacctcattggccaggttaaaagacaccacaaatgtttcacttggtattcccattagatatgtgtttccccacca 27735818  T
Q  109 atgacaaaccccatttaagtacaccatagaaccttccgaagtcaaataacgttgtggcatatcaacataaagtttcttccaagagttacttcttagacta 208  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  ||||||   |||||||    
T  27735819 atggcaaaccccatttaaatacaccatagaaccttccgaagtcaaataacgttgccgcatatcaacataaagtttcttccaacggttactctgtagacta 27735918  T
Q  209 tatatatcccaatagggaccgggcggtgcaacttgccactcatcttcacaacctccaatataaacaacatattgaatgaccttatagtcatctcgaacat 308  Q
    ||||| ||||||||||| ||||| |||||||     |||| ||    |  | ||||||||||||||||||| |||| ||| ||||| ||||||| |||||    
T  27735919 tatatttcccaataggggccgggtggtgcaa-----cact-ataacaatcatctccaatataaacaacatactgaaggactttataatcatctctaacat 27736012  T
Q  309 ggtcataaccaaatccatgaatattaaaa 337  Q
    | |||||||||||||||||||||||||||    
T  27736013 gatcataaccaaatccatgaatattaaaa 27736041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 331
Target Start/End: Original strand, 27717303 - 27717470
Alignment:
Q  165 gcatatcaacataaagtttcttccaagagttacttctt-agactatatatatcccaatagggaccgggcggtgcaacttgccactcatcttcacaacctc 263  Q
    |||||||||||||||||||||||||||| ||  || || ||||||||||||| ||||||||| || |||| |||  |||| || | ||||  | ||| ||    
T  27717303 gcatatcaacataaagtttcttccaagaattttttttttagactatatatataccaataggggccaggcgatgcttcttgacaataatctataaaacatc 27717402  T
Q  264 caatataaacaacatattgaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaata 331  Q
    |  ||||| | |||||||||||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  27717403 cggtataatctacatattgaatgattttatagtcatctctaacatggtcatagccaaatccatgaata 27717470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 7435557 - 7435606
Alignment:
Q  170 tcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||    
T  7435557 tcaacatcaagtttcttccaagagttgcttcttagactatatatctccca 7435606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 34324940 - 34324900
Alignment:
Q  289 cttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  34324940 cttatagtcatctctaacatggtcataaccaaatccatgaa 34324900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 7524386 - 7524435
Alignment:
Q  170 tcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||||| |||||||||||||||||| |||||||| |||||||| |||||    
T  7524386 tcaacatcaagtttcttccaagagttgcttcttaggctatatatttccca 7524435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 16920758 - 16920702
Alignment:
Q  163 tggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    |||||| |||| || ||||||| ||||||| |||||||||||||||||||| |||||    
T  16920758 tggcatttcaatatcaagtttcctccaagaattacttcttagactatatatctccca 16920702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 27595668 - 27595754
Alignment:
Q  139 accttccgaagtcaaataacgttgtggcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaataggg 225  Q
    |||| ||||| || || |||| ||| ||||||||||||||||| ||| |||| |||||||   || ||||||||| |||||||||||    
T  27595668 acctaccgaactccaaaaacgatgtcgcatatcaacataaagtgtctcccaaaagttactctctaaactatatatttcccaataggg 27595754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 7429458 - 7429502
Alignment:
Q  287 accttatagtcatctcgaacatggtcataaccaaatccatgaata 331  Q
    ||||||||||||||||  |||||||||||||| |||||| |||||    
T  7429458 accttatagtcatctcttacatggtcataaccgaatccaagaata 7429502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 14682135 - 14682451
Alignment:
Q  15 caaagggaaaaagagtggtaacgggcacctcagtggccaggttaaaagacaccacaaatgtttcacttggttgacgatatgtttttccccaccaatgaca 114  Q
    |||||||||| ||||||||||| || |||||| ||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||    
T  14682135 caaagggaaagagagtggtaacaggaacctcattggccaggtcaaaagacaccacaaatgtttcaattggttgacgatatatttttccccaccaatggca 14682234  T
Q  115 aaccccatttaagtacaccatagaaccttccgaagtcaaataacgttgtggcatatcaacataaagtttcttccaagagttacttcttagactatatata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||  |||||||| ||||||||||||     
T  14682235 aaccccatttaagtacaccatagaaccttccgaagtcaaataacgttgtcgcatatcaacgtaaagtttcttccaatggttacttcgtagactatatatg 14682334  T
Q  215 tcccaatagggaccgggcggtgcaacttg---ccactcatcttcacaacctccaatataaacaacatattgaatgaccttatagtcatctcgaacatggt 311  Q
    ||||||| ||   |||| ||||| |||||   ||| |||||||         |||||||||||||||  |||| ||||||||| ||||||| |||| | |    
T  14682335 tcccaatgggtggcgggtggtgccacttgatcccaatcatctt---------caatataaacaacatgctgaaggaccttataatcatctctaacacgat 14682425  T
Q  312 cataaccaaatccatgaatattaaaa 337  Q
    |||||||||||||||||||| |||||    
T  14682426 cataaccaaatccatgaatagtaaaa 14682451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 3368283 - 3368330
Alignment:
Q  282 gaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  3368283 gaattaccttatagtcatctctaacttggtcataaccaaatccatgaa 3368330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 4027516 - 4027476
Alignment:
Q  289 cttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  4027516 cttatagtcatctctaacacggtcataaccaaatccatgaa 4027476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 27183570 - 27183523
Alignment:
Q  282 gaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||| ||||| ||||||||||  |||||||||||||||||||||||||    
T  27183570 gaataaccttgtagtcatctctgacatggtcataaccaaatccatgaa 27183523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 31135480 - 31135517
Alignment:
Q  292 atagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  31135480 atagtcatcttgaacatggtcatagccaaatccatgaa 31135517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 19225744 - 19225801
Alignment:
Q  165 gcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaata 222  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  19225744 gcatatcaacataaagttttttccaagagttactttttagactatatatgtcccaata 19225801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 19221281 - 19221209
Alignment:
Q  165 gcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaatagggaccgggcggtgc 237  Q
    |||||||||||| |||||| |||||||||||||  |||||||||||||| |||||||| || |||||||||||    
T  19221281 gcatatcaacatgaagttttttccaagagttacgccttagactatatatgtcccaataagggccgggcggtgc 19221209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 344721 - 344684
Alignment:
Q  290 ttatagtcatctcgaacatggtcataaccaaatccatg 327  Q
    |||||||||||||  |||||||||||||||||||||||    
T  344721 ttatagtcatctctgacatggtcataaccaaatccatg 344684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 344869 - 344828
Alignment:
Q  178 aagtttcttccaagagttacttcttagactatatatatccca 219  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  344869 aagtttcttccaagagttactttttagactgtatatctccca 344828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 23216413 - 23216471
Alignment:
Q  275 acatattgaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaatatt 333  Q
    |||||| |||||| ||||||||||| |  ||||||||||||||||||||||||||||||    
T  23216413 acatatcgaatgatcttatagtcatttataacatggtcataaccaaatccatgaatatt 23216471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 29130921 - 29130872
Alignment:
Q  282 gaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaata 331  Q
    |||||||||||||||||| |  |||||||||||||| |||||||||||||    
T  29130921 gaatgaccttatagtcatttataacatggtcataactaaatccatgaata 29130872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 32745195 - 32745250
Alignment:
Q  164 ggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||| ||||||| ||||||| |||| |||||||||||||| |||||||| |||||    
T  32745195 ggcatgtcaacatcaagtttcctccaggagttacttcttaggctatatatctccca 32745250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 32961060 - 32961117
Alignment:
Q  162 gtggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||||| ||||||| ||||||| |||| |||||||||||||  |||||||| |||||    
T  32961060 gtggcatgtcaacatcaagtttcctccacgagttacttcttacgctatatatctccca 32961117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 29012505 - 29012453
Alignment:
Q  282 gaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaatatta 334  Q
    |||||||||||||||| | |  |||| ||||||||||||||||||||| ||||    
T  29012505 gaatgaccttatagtcttttgtaacacggtcataaccaaatccatgaagatta 29012453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 29152571 - 29152619
Alignment:
Q  281 tgaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||||||| |||||||||| |  |||||||| |||||||||||||||||    
T  29152571 tgaatgacattatagtcatttgtaacatggttataaccaaatccatgaa 29152619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 29299679 - 29299627
Alignment:
Q  277 atattgaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||| |||||||||| ||||||| |  |||| |||||||||||||||||||||    
T  29299679 atatcgaatgaccttgtagtcatttttaacaaggtcataaccaaatccatgaa 29299627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 2703390 - 2703336
Alignment:
Q  275 acatattgaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  2703390 acatgttgaatgactttatagtcatccctaacatggtcataaccaaatccatgaa 2703336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 30651171 - 30651131
Alignment:
Q  289 cttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  30651171 cttatagtcatctctaacatggtcataaccaaatccatgaa 30651131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 31777517 - 31777477
Alignment:
Q  289 cttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  31777517 cttatagtcatctctaacatggtcataaccaaatccatgaa 31777477  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 37512659 - 37512600
Alignment:
Q  161 tgtggcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaa 220  Q
    |||||||||| ||||| ||||||  |||||||||| |||||||| |||||||||||||||    
T  37512659 tgtggcatattaacatcaagttttctccaagagttgcttcttaggctatatatatcccaa 37512600  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 32642699 - 32642642
Alignment:
Q  163 tggcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaa 220  Q
    ||||||| |||||| ||||||  |||||||||||||||||| ||||||||| ||||||    
T  32642699 tggcataacaacatcaagttttctccaagagttacttcttaaactatatatctcccaa 32642642  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 42782984 - 42782935
Alignment:
Q  164 ggcatatcaacataaagtttcttccaagagttacttcttagactatatat 213  Q
    |||||| |||||| ||||||| |||||||||||||||||||||| |||||    
T  42782984 ggcataacaacatcaagtttcctccaagagttacttcttagactgtatat 42782935  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 28994664 - 28994611
Alignment:
Q  275 acatattgaatgaccttatagtcatctcgaacatggtcataaccaaatccatga 328  Q
    |||||||| |||| |||||||||||| | ||||||||||||  |||||||||||    
T  28994664 acatattggatgagcttatagtcatccctaacatggtcatagtcaaatccatga 28994611  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 41227708 - 41227659
Alignment:
Q  164 ggcatatcaacataaagtttcttccaagagttacttcttagactatatat 213  Q
    |||||| |||||| ||||||| |||||| ||||||||||||||| |||||    
T  41227708 ggcataacaacatcaagtttcctccaagggttacttcttagactgtatat 41227659  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 42565277 - 42565333
Alignment:
Q  164 ggcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaa 220  Q
    ||||||||| ||| |||||| ||||||||||| |||||||| ||||| || ||||||    
T  42565277 ggcatatcagcatcaagtttattccaagagttgcttcttaggctataaatctcccaa 42565333  T

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Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 17603 - 17650
Alignment:
Q  282 gaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    ||||||| || |||||||||| ||||||||||||||||||||||||||    
T  17603 gaatgactttgtagtcatctctaacatggtcataaccaaatccatgaa 17650  T

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Target: scaffold0129; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 33999 - 34046
Alignment:
Q  282 gaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||||||||| |||||||||| |||||| |||||||||||||||||||    
T  33999 gaatgaccttgtagtcatctctaacatgctcataaccaaatccatgaa 34046  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 4877592 - 4877550
Alignment:
Q  178 aagtttcttccaagagttacttcttagactatatatatcccaa 220  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  4877592 aagtttcttccaagagttacttcttagactataaatctcccaa 4877550  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 48742276 - 48742341
Alignment:
Q  154 ataacgttgtggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||| ||| |||||||| | || || |||| |||||||||||||||||||||| ||||| |||||    
T  48742276 ataacattgaggcatatccagatcaattttcctccaagagttacttcttagactgtatatctccca 48742341  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 25627802 - 25627762
Alignment:
Q  289 cttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  25627802 cttatagtcatctctagcatggtcataaccaaatccatgaa 25627762  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 42445936 - 42445889
Alignment:
Q  282 gaatgaccttatagtcatctcgaacatggtcataaccaaatccatgaa 329  Q
    ||||||||||||||||||||  ||||  ||||||||||||||||||||    
T  42445936 gaatgaccttatagtcatctgtaacactgtcataaccaaatccatgaa 42445889  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 42446081 - 42446026
Alignment:
Q  164 ggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||| ||||||| ||||||| |||| | ||||||||||||||||||||| |||||    
T  42446081 ggcatgtcaacatcaagtttcctccacgggttacttcttagactatatatctccca 42446026  T

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Target: scaffold0831 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 332
Target Start/End: Original strand, 1777 - 1805
Alignment:
Q  304 aacatggtcataaccaaatccatgaatat 332  Q
    |||||||||||||||||||||||||||||    
T  1777 aacatggtcataaccaaatccatgaatat 1805  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 33777 - 33833
Alignment:
Q  163 tggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    |||||| |||| || ||||||| |||| |||||||||||||| |||||||| |||||    
T  33777 tggcatgtcaatatcaagtttcctccacgagttacttcttaggctatatatctccca 33833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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