View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4253_high_3 (Length: 320)
Name: NF4253_high_3
Description: NF4253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4253_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 19247905 - 19247600
Alignment:
| Q |
1 |
tcatcactatgcttcaatttctgaaacttttcacaactcatttcttgatgccaaggagttttacattgaacacaaattatccttttgcaatgaggacata |
100 |
Q |
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| T |
19247905 |
tcatcactatgcttcaatttctgaaacttctcacaactcatttcttgatgccaaggagttttacattgaacacaaattatccttttgcaatgaggacata |
19247806 |
T |
|
| Q |
101 |
tgcattgtgaaatcacttcacttttttgattattctcactaattaaaagtgctgaacaatcataaaaaggacaatagaatttattctcttcaggaatcac |
200 |
Q |
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| T |
19247805 |
tgcattgtgcaatcacttcacttttttgattattctcactaattaaaagtgctgaacaatcataaaaaggacaatagaatttattctcttcaggaatcac |
19247706 |
T |
|
| Q |
201 |
tgattcactcaaagctttttcccaccaatccaacactttgttaggtaaaattggtttgcaatattgagcattcaatactccagaacaacttgattcagga |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19247705 |
tgattcactcaaagatttttcccaccaatccaacactttgttaggtaaaattggtttgcaatattgagcattcaatactccagaacaacttgattcagga |
19247606 |
T |
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| Q |
301 |
caattt |
306 |
Q |
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|||||| |
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| T |
19247605 |
caattt |
19247600 |
T |
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