View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4253_high_4 (Length: 302)
Name: NF4253_high_4
Description: NF4253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4253_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 285
Target Start/End: Original strand, 40263046 - 40263287
Alignment:
| Q |
51 |
taagtataacttcgtaaacttagcatgctctctcttgaaactcatttgcaaactctaataaaactatgaaactacgtagaatatgtctcatgagttgggg |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40263046 |
taagtataacttcgtaaacttagcatgctctctcttgaaactcatttgcaaactctaataaaattatgaaactacgtagaatatgtctcatgagtt-ggg |
40263144 |
T |
|
| Q |
151 |
tctcgtctcacctcaaaaacattatatcacactcactatgtgcataaaagt-atgttatctcttcgttgtggcgaagagtaccatatttctccttcctct |
249 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40263145 |
tctcgtctcacctcaaaaacattatattacactcactatgtgcataaaagtcatgttatctcttcgttgtggcgaagagtaccatatttctccttcctct |
40263244 |
T |
|
| Q |
250 |
tt-------ttctacactgaggtatgttacttataattagtgt |
285 |
Q |
| |
|
|| ||||||||| |||||||||||||| ||||||||| |
|
|
| T |
40263245 |
ttttacgagttctacacttaggtatgttacttacaattagtgt |
40263287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University