View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4253_high_6 (Length: 235)
Name: NF4253_high_6
Description: NF4253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4253_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33415018 - 33415149
Alignment:
| Q |
1 |
ttgttaattccatgactaccgtcacaataacaatgtcttccttcatctctataatactttttcgcactctttcaacatccatggccaccgcacaactcct |
100 |
Q |
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| T |
33415018 |
ttgttaattccatgactaccgtcacaataacaatgtcttccttcatctttataatactttttcacactctttcaacatctatggccaccgcacaactcct |
33415117 |
T |
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| Q |
101 |
caacgctgccactcaagatgcttccaatggag |
132 |
Q |
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| T |
33415118 |
caacgctgccactcaagatgcttccaatggag |
33415149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 33409584 - 33409692
Alignment:
| Q |
24 |
acaataacaatgtcttccttcatctctataatactttttcgcactctttcaacatccatggccaccgcacaactcctcaacgctgccactcaagatgctt |
123 |
Q |
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| T |
33409584 |
acaataacaatgtcttccttcatctttataatactttttcacactctttcagcatccatggccaccgcacaactcctcaacgctgccactcaagatgctt |
33409683 |
T |
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| Q |
124 |
ccaatggag |
132 |
Q |
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| T |
33409684 |
ccaatggag |
33409692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 33397146 - 33397236
Alignment:
| Q |
8 |
ttccatgactaccgtcacaataacaatgtcttccttcatctctataatactttttcgcactctttcaacatccatggccaccgcacaactc |
98 |
Q |
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| T |
33397146 |
ttccatggccaccgtcacattagcaatgtcttccttcatcattttaatactttttcacactctttcgtcatccatggccactgcacaactc |
33397236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 33399336 - 33399433
Alignment:
| Q |
1 |
ttgttaattccatgactaccgtcacaataacaatgtcttccttcatctctataatactttttcgcactctttcaacatccatggccaccgcacaactc |
98 |
Q |
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| T |
33399336 |
ttgttcatgccatggccaccgtcacattagcaatgtcttccttcatcattttaatactttttcacactctttcgtcatccatggccaccgtacaactc |
33399433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 33415210 - 33415239
Alignment:
| Q |
193 |
catacgaagtggcaattgtatcacgatatt |
222 |
Q |
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| T |
33415210 |
catacgaagtggcaattgtatcacgatatt |
33415239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 33409753 - 33409781
Alignment:
| Q |
193 |
catacgaagtggcaattgtatcacgatat |
221 |
Q |
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| T |
33409753 |
catacgaagtggcaattgtatcacgatat |
33409781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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