View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4253_low_2 (Length: 368)
Name: NF4253_low_2
Description: NF4253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4253_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 42960272 - 42959918
Alignment:
| Q |
1 |
cccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960272 |
cccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaact |
42960173 |
T |
|
| Q |
101 |
acagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960172 |
acagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactg |
42960073 |
T |
|
| Q |
201 |
tgatcactatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960072 |
tgatcactatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatgg |
42959973 |
T |
|
| Q |
301 |
atcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42959972 |
atcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
42959918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 355
Target Start/End: Original strand, 5504586 - 5504817
Alignment:
| Q |
124 |
tgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttggcactatcat |
223 |
Q |
| |
|
||||||| ||| | ||||| | |||||||| |||| |||||| ||| || ||||| ||||| || | ||||||||| ||||| |||||||| || ||| |
|
|
| T |
5504586 |
tgtgaagactactgtcaacttcataccaaaacatgccaatgacacatcttccctagagcagttctgcaaagacactgtcatcacaatttggcattaccat |
5504685 |
T |
|
| Q |
224 |
ggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttaccgaatcgccgg |
323 |
Q |
| |
|
|||||||| ||||| || ||||| | | ||| |||||||||||| ||| ||||||| || ||| | ||||| ||||| ||||| ||||| || | |
|
|
| T |
5504686 |
ggtggatgtcatgtgggaaaggtagttagccctgattataaggttcttgacgttgacagactccgagtcgtcgatggttcaacgtttactgaatcaccag |
5504785 |
T |
|
| Q |
324 |
gaacaaatcctcaagctactgtcatgatgatg |
355 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |
|
|
| T |
5504786 |
gaacaaatcctcaagccactgtgatgatgatg |
5504817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 3094265 - 3094314
Alignment:
| Q |
179 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
228 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
3094265 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
3094314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 3085419 - 3085468
Alignment:
| Q |
179 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
228 |
Q |
| |
|
||||| |||||||||||||||||||| || || ||||| ||||||||||| |
|
|
| T |
3085419 |
gaacaattttgtagagacactgtgatgacaatatggcattatcatggtgg |
3085468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University