View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4253_low_3 (Length: 327)
Name: NF4253_low_3
Description: NF4253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4253_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 44623718 - 44623974
Alignment:
| Q |
18 |
attgtaaatggaagacttacggaggacggttgaaattaggagaagcgtggttgagtgtataggaggaggaagaagtagaaggcgatgacgtggcatgagt |
117 |
Q |
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| T |
44623718 |
attgtaaatggaagacttacggaggacggttgaaattaggagaagcgtggttgagtgtataggaggaagaagaagtagaaggcgatgacgtggcatgagt |
44623817 |
T |
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| Q |
118 |
tggagttggaaagttcatagctggaagaattcttgtttgagtgctttaacaagaagaagtatcgaacccagaagtgaatttgaaggtgataatgataagt |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44623818 |
tggagttggaaagttcatagctggaaaaattcttgtttgagtgctttaacaagaagaagtatcgaacccagaagtgaatttgaaggtgataatgataagt |
44623917 |
T |
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| Q |
218 |
ttaacc-aactacaattagtatggaggagaatgagttataaacttagcacgtgttgtg |
274 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44623918 |
ttaaccaaactacaattagtatggaggagaatgagttat-aacttagcacgtgttgtg |
44623974 |
T |
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