View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4254-Insertion-13 (Length: 92)

Name: NF4254-Insertion-13
Description: NF4254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4254-Insertion-13
NF4254-Insertion-13
[»] chr1 (7 HSPs)
chr1 (31-91)||(22790930-22790990)
chr1 (31-91)||(31183730-31183790)
chr1 (26-91)||(30193572-30193637)
chr1 (26-83)||(2137087-2137147)
chr1 (26-83)||(46285675-46285732)
chr1 (38-91)||(46594074-46594126)
chr1 (37-83)||(50461008-50461054)
[»] chr8 (4 HSPs)
chr8 (26-88)||(37232062-37232124)
chr8 (26-83)||(9136495-9136552)
chr8 (42-87)||(14180354-14180399)
chr8 (40-92)||(39297494-39297549)
[»] chr2 (6 HSPs)
chr2 (26-91)||(45389031-45389096)
chr2 (26-90)||(26352876-26352940)
chr2 (37-91)||(43344680-43344734)
chr2 (28-91)||(3353394-3353457)
chr2 (32-91)||(14749561-14749620)
chr2 (49-91)||(36925814-36925856)
[»] chr7 (5 HSPs)
chr7 (27-89)||(31396965-31397027)
chr7 (31-88)||(48138725-48138782)
chr7 (31-91)||(9229411-9229471)
chr7 (31-83)||(44797972-44798027)
chr7 (26-91)||(2185520-2185585)
[»] chr3 (14 HSPs)
chr3 (26-91)||(21858459-21858524)
chr3 (28-92)||(21853967-21854031)
chr3 (31-91)||(36172004-36172064)
chr3 (37-91)||(21842818-21842872)
chr3 (31-91)||(16343164-16343225)
chr3 (31-83)||(2111634-2111686)
chr3 (31-91)||(35433502-35433562)
chr3 (28-91)||(47014631-47014694)
chr3 (26-88)||(24121331-24121393)
chr3 (41-90)||(1341509-1341558)
chr3 (54-88)||(20820378-20820412)
chr3 (31-91)||(12176551-12176612)
chr3 (38-74)||(31489305-31489341)
chr3 (37-84)||(43471977-43472024)
[»] chr6 (4 HSPs)
chr6 (31-91)||(1929172-1929232)
chr6 (31-76)||(17533259-17533304)
chr6 (54-91)||(211884-211921)
chr6 (30-91)||(32340056-32340117)
[»] chr4 (5 HSPs)
chr4 (31-91)||(47724658-47724718)
chr4 (31-91)||(10632310-10632370)
chr4 (43-87)||(34072808-34072852)
chr4 (28-83)||(44746679-44746734)
chr4 (26-81)||(22198649-22198705)
[»] chr5 (2 HSPs)
chr5 (38-88)||(7732503-7732553)
chr5 (26-89)||(12118580-12118646)
[»] scaffold0051 (1 HSPs)
scaffold0051 (31-91)||(53808-53869)


Alignment Details
Target: chr1 (Bit Score: 53; Significance: 5e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 22790930 - 22790990
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22790930 cattgattactcttcaatactatataatcataaaagtcacaatttacaaaaaataatacat 22790990  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 31183790 - 31183730
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  31183790 cattgattactcttcaatactatataatcataaaagtcaccatttacaaaaaataatacat 31183730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 30193637 - 30193572
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||| ||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  30193637 ataatcattgattactcttcaatacaatataatcataaaattcacaatttacaaaaaataatacat 30193572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 2137147 - 2137087
Alignment:
Q  26 ataagcattggttactcttcaatacta---aataatcataaaagtcacaatttacaaaaaa 83  Q
    |||||||||  ||||||||||||||||   |||||||||||||||||||||||||||||||    
T  2137147 ataagcattaattactcttcaatactactaaataatcataaaagtcacaatttacaaaaaa 2137087  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 46285732 - 46285675
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaa 83  Q
    |||| ||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  46285732 ataaccattgattactcttcagtactatataatcataaaagtcacaatttacagaaaa 46285675  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 46594074 - 46594126
Alignment:
Q  38 tactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  46594074 tactcttcaatactatataatcataaat-tcacaatttacaaaaaataatacat 46594126  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 50461008 - 50461054
Alignment:
Q  37 ttactcttcaatactaaataatcataaaagtcacaatttacaaaaaa 83  Q
    |||||||||  || || ||||||||||||||||||||||||||||||    
T  50461008 ttactcttcgttagtatataatcataaaagtcacaatttacaaaaaa 50461054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-21
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 37232124 - 37232062
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataata 88  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  37232124 ataagcattgattactcttcaatactatataagcataaaagtcacaatttacaaaaaataata 37232062  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 9136495 - 9136552
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaa 83  Q
    |||||||||| || ||||||||||||| |||||||||||||||| |||||||||||||    
T  9136495 ataagcattgatttctcttcaatactatataatcataaaagtcataatttacaaaaaa 9136552  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 14180399 - 14180354
Alignment:
Q  42 cttcaatactaaataatcataaaagtcacaatttacaaaaaataat 87  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  14180399 cttcaatactatttaatcataaaagtcacaatttacaaaaaataat 14180354  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 39297494 - 39297549
Alignment:
Q  40 ctcttcaatactaaataatcataaaagtcacaattt---acaaaaaataatacata 92  Q
    ||||||||||||| ||||||||||||||||||||||   |||||||||||||||||    
T  39297494 ctcttcaatactatataatcataaaagtcacaatttacaacaaaaaataatacata 39297549  T

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Target: chr2 (Bit Score: 50; Significance: 3e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 45389096 - 45389031
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||||||| | ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45389096 ataagcatcgattacttttcaatactatataatcataaaagtcacaatttacaaaaaataatacat 45389031  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 26352940 - 26352876
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataataca 90  Q
    |||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  26352940 ataagcattgattactcttcaatactataaaatcataaaagtcataatttacaaaaaataataca 26352876  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 43344680 - 43344734
Alignment:
Q  37 ttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  43344680 ttactcttcaatactatataatcataaaagtcacaattcacaaaaaataatacat 43344734  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 3353457 - 3353394
Alignment:
Q  28 aagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  3353457 aagcattgattacttttcaatactatataatcataaaagtcccaatttacaaaaaataacacat 3353394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 14749620 - 14749561
Alignment:
Q  32 attggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||| |||||||||||||||| |||||||||||||||   ||||||||||||||||||||    
T  14749620 attgattactcttcaatactatataatcataaaagtcgtgatttacaaaaaataatacat 14749561  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 36925856 - 36925814
Alignment:
Q  49 actaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  36925856 actatataaccataaaagtcacaatttacaaaaaataatacat 36925814  T

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Target: chr7 (Bit Score: 47; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 31396965 - 31397027
Alignment:
Q  27 taagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatac 89  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  31396965 taagcattggtttctcttcaatgctatataatcataaaagtcacaatttacaaaaagtaatac 31397027  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 48138782 - 48138725
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataata 88  Q
    ||||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  48138782 cattgattaatcttcaatactatataatcataaaattcacaatttacaaaaaataata 48138725  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 9229411 - 9229471
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    ||||| ||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||    
T  9229411 cattgattactcttcaaaactatataatcataaaagtcgcgatttacaaaaaataatacat 9229471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 44797972 - 44798027
Alignment:
Q  31 cattggttactcttcaatact---aaataatcataaaagtcacaatttacaaaaaa 83  Q
    ||||| |||||||||||||||   | ||||||||||||||||||||||||||||||    
T  44797972 cattgattactcttcaatactgctatataatcataaaagtcacaatttacaaaaaa 44798027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 2185520 - 2185585
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||| ||||| |||||||||| || ||  |||| ||||||||||||||||  ||||||||||||||    
T  2185520 ataaacattgattactcttcattattatctaattataaaagtcacaatttttaaaaaataatacat 2185585  T

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Target: chr3 (Bit Score: 46; Significance: 8e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 21858524 - 21858459
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||||||||  |||||||||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  21858524 ataagcattaattactcttcaatactatataatcataaaagtcacgatttacgaaaaataatacat 21858459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 21854031 - 21853967
Alignment:
Q  28 aagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacata 92  Q
    |||||||  |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  21854031 aagcattaattactcttcaatactatataatcataaaagtcacgatttacagaaaataatacata 21853967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 36172004 - 36172064
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  36172004 cattgattattcttcaatactatataatcataaaagtcgcaatttacaaaaaataatacat 36172064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 21842872 - 21842818
Alignment:
Q  37 ttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||||||||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  21842872 ttactcttcaatactatataatcataaaagtcacgatttacgaaaaataatacat 21842818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 16343225 - 16343164
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaa-aaaataatacat 91  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  16343225 cattgattactcttcaatactatataatcataaaagtcgcaatttacaaaaaaataatacat 16343164  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 2111686 - 2111634
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaa 83  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||||||||||    
T  2111686 cattgattactcttcaatattatataatcataaaagtcacaatttacaaaaaa 2111634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 35433562 - 35433502
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    ||||| |||||||||||||||| |||||||||||| || | ||||||||||||||||||||    
T  35433562 cattgattactcttcaatactatataatcataaaaatcgcgatttacaaaaaataatacat 35433502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 47014694 - 47014631
Alignment:
Q  28 aagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||||||| ||||  |||||||||| |||||||||||||| | |||||||||||||||||||||    
T  47014694 aagcattgattacctttcaatactatataatcataaaagttataatttacaaaaaataatacat 47014631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 24121393 - 24121331
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataata 88  Q
    |||| ||||| ||| | ||| |||||| |||||||||||||||||||||||| ||||||||||    
T  24121393 ataaacattgattattgttctatactatataatcataaaagtcacaatttaccaaaaataata 24121331  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 1341509 - 1341558
Alignment:
Q  41 tcttcaatactaaataatcataaaagtcacaatttacaaaaaataataca 90  Q
    |||||| ||||| |||||||||||| || |||||||||||||||||||||    
T  1341509 tcttcagtactacataatcataaaaatctcaatttacaaaaaataataca 1341558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 20820412 - 20820378
Alignment:
Q  54 ataatcataaaagtcacaatttacaaaaaataata 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  20820412 ataatcataaaagtcacaatttacaaaatataata 20820378  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 12176551 - 12176612
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaattta-caaaaaataatacat 91  Q
    ||||| ||||| |||||||||  ||||||||||||||| |||||||  ||||||||||||||    
T  12176551 cattgattacttttcaatactgtataatcataaaagtcgcaatttataaaaaaataatacat 12176612  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 31489305 - 31489341
Alignment:
Q  38 tactcttcaatactaaataatcataaaagtcacaatt 74  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  31489305 tactcttgaatactatataatcataaaagtcacaatt 31489341  T

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Target: chr3; HSP #14
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 43472024 - 43471977
Alignment:
Q  37 ttactcttcaatactaaataatcataaaagtcacaatttacaaaaaat 84  Q
    |||||||||||||||  ||||   ||||||||||||||||||||||||    
T  43472024 ttactcttcaatactgtataactgtaaaagtcacaatttacaaaaaat 43471977  T

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Target: chr6 (Bit Score: 45; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 1929232 - 1929172
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    ||||| |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  1929232 cattgattactcttcaatactatataattataaaagtcgcaatttacaaaaaataatacat 1929172  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 17533259 - 17533304
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaattta 76  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||    
T  17533259 cattgattactcttcaatactatatattcataaaagtcacaattta 17533304  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 211884 - 211921
Alignment:
Q  54 ataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  211884 ataatcataaaagtcacaatttacaaaatataacacat 211921  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 32340056 - 32340117
Alignment:
Q  30 gcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    ||||||||||||||||| || || || || ||||||||||||||||   |||||||||||||    
T  32340056 gcattggttactcttcattattatattattataaaagtcacaattttttaaaaataatacat 32340117  T

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Target: chr4 (Bit Score: 45; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 47724658 - 47724718
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    ||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  47724658 cattgattactattcaatactatataatcataaaagtcgcaatttacaaaaaataatacat 47724718  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 10632370 - 10632310
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaataatacat 91  Q
    ||||| ||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  10632370 cattgattactattcaatattatataatcataaatgtcacaatttacaaaaaataatacat 10632310  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 34072808 - 34072852
Alignment:
Q  43 ttcaatactaaataatcataaaagtcacaatttacaaaaaataat 87  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  34072808 ttcaatactatataatcataaaagtcacaatttacaaaaaataat 34072852  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 44746734 - 44746679
Alignment:
Q  28 aagcattggttactcttcaatactaaataatcataaaagtcacaatttacaaaaaa 83  Q
    |||||||  ||||| |||||||||| |||||||||||||||| |||||| ||||||    
T  44746734 aagcattcattacttttcaatactatataatcataaaagtcataatttaaaaaaaa 44746679  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 22198649 - 22198705
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcat-aaaagtcacaatttacaaaa 81  Q
    |||||||||  |||||||||||||||| |||||||| |||| |||| ||||||||||    
T  22198649 ataagcatttattactcttcaatactatataatcataaaaaatcactatttacaaaa 22198705  T

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Target: chr5 (Bit Score: 43; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 7732553 - 7732503
Alignment:
Q  38 tactcttcaatactaaataatcataaaagtcacaatttacaaaaaataata 88  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  7732553 tactcttcaatactatataatcataaaagtcacaatttataaaaaataata 7732503  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 12118646 - 12118580
Alignment:
Q  26 ataagcattggttactcttcaatactaaataatcat---aaaagtcacaatttacaaaaaataatac 89  Q
    |||||||||| |||||||||| ||||  ||||||||   |||||| ||||||||||||||| |||||    
T  12118646 ataagcattgattactcttcattactttataatcattataaaagttacaatttacaaaaaaaaatac 12118580  T

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Target: scaffold0051 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 53869 - 53808
Alignment:
Q  31 cattggttactcttcaatactaaataatcataaaagtcacaatttacaa-aaaataatacat 91  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  53869 cattgattactcttcaatactatataatcataaaagtcgcaatttacaaaaaaataatacat 53808  T

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