View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4254-Insertion-6 (Length: 140)

Name: NF4254-Insertion-6
Description: NF4254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4254-Insertion-6
NF4254-Insertion-6
[»] chr3 (4 HSPs)
chr3 (1-140)||(53285265-53285404)
chr3 (16-130)||(54139053-54139158)
chr3 (5-111)||(52808879-52808978)
chr3 (55-121)||(1923500-1923566)
[»] chr6 (1 HSPs)
chr6 (3-130)||(11844358-11844485)
[»] chr1 (3 HSPs)
chr1 (53-89)||(23620087-23620123)
chr1 (53-89)||(23651432-23651468)
chr1 (53-89)||(23736866-23736902)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 1e-73; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 53285404 - 53285265
Alignment:
Q  1 tcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaacttacaaacataacgaagaaattttatagatacctgcaccaatgcatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53285404 tcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaacttacaaacataacgaagaaattttatagatacctgcaccaatgcatca 53285305  T
Q  101 ctcaggcgctcagccaaggtccataaatcatcactaaata 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53285304 ctcaggcgctcagccaaggtccataaatcatcactaaata 53285265  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 54139158 - 54139053
Alignment:
Q  16 acattctaatcaaacaaccagcagatgagttacaaacttacaaacataacgaagaaattttatagatacctgcaccaatgcatcactcaggcgctcagcc 115  Q
    |||||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||| ||||| |||||||| ||||||||| ||||||    
T  54139158 acattctaatcaaacaaccagcagatgagttacaaac--------ataacgaagaaatttta-agatagctgcatcaatgcatgactcaggcgatcagcc 54139068  T
Q  116 aaggtccataaatca 130  Q
    |||||||||||||||    
T  54139067 aaggtccataaatca 54139053  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 52808879 - 52808978
Alignment:
Q  5 agacatcatatacattctaatcaaacaaccagcagatgagttacaaacttacaaacataacgaagaaattttatagatacctgcaccaatgcatcactca 104  Q
    ||||| || ||||||||||||| ||||||||| ||||| ||||||||       |||||| |||||||||||||| ||||||||| |||| |||||||||    
T  52808879 agacaacagatacattctaatctaacaaccagtagatgtgttacaaa-------acataatgaagaaattttataaatacctgcatcaatacatcactca 52808971  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 1923566 - 1923500
Alignment:
Q  55 acaaacataacgaagaaattttatagatacctgcaccaatgcatcactcaggcgctcagccaaggtc 121  Q
    ||||||||||  ||||||||||||| ||||||||| |||||||| || ||||||||| |||| ||||    
T  1923566 acaaacataataaagaaattttataaatacctgcatcaatgcattacccaggcgctcggccatggtc 1923500  T

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Target: chr6 (Bit Score: 128; Significance: 1e-66; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 11844358 - 11844485
Alignment:
Q  3 atagacatcatatacattctaatcaaacaaccagcagatgagttacaaacttacaaacataacgaagaaattttatagatacctgcaccaatgcatcact 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11844358 atagacatcatatacattctaatcaaacaaccagcagatgagttacaaacttacaaacataacgaagaaattttatagatacctgcaccaatgcatcact 11844457  T
Q  103 caggcgctcagccaaggtccataaatca 130  Q
    ||||||||||||||||||||||||||||    
T  11844458 caggcgctcagccaaggtccataaatca 11844485  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 23620087 - 23620123
Alignment:
Q  53 ttacaaacataacgaagaaattttatagatacctgca 89  Q
    ||||||||||||||||||||||||| | |||||||||    
T  23620087 ttacaaacataacgaagaaattttaaaaatacctgca 23620123  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 23651432 - 23651468
Alignment:
Q  53 ttacaaacataacgaagaaattttatagatacctgca 89  Q
    ||||||||||||||||||||||||| | |||||||||    
T  23651432 ttacaaacataacgaagaaattttaaaaatacctgca 23651468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 23736866 - 23736902
Alignment:
Q  53 ttacaaacataacgaagaaattttatagatacctgca 89  Q
    ||||||||||||||||||||||||| | |||||||||    
T  23736866 ttacaaacataacgaagaaattttaaaaatacctgca 23736902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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