View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4254_high_10 (Length: 329)
Name: NF4254_high_10
Description: NF4254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4254_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 30826547 - 30826334
Alignment:
| Q |
16 |
gaactctgaaaaggaaaggctttcaattgccatgttccatgggctaaaacaagatagtattgtaggtccaatggagagcttgattactgaaaaaacacca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30826547 |
gaactctgaaaaggaaaggctttcaattgccattttccatggcctaaaacaagatagtattgtaggtccaatggagagcttgattactgaaaaaacacca |
30826448 |
T |
|
| Q |
116 |
ccacggtttaaaaaagttggagtagaggaatacttnnnnnnnttctttgctcgtaaacttgaaggaaagtcactcattgatgacatgagattagatcatc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30826447 |
ccacggtttaaaaaagttggagtagaggaatacttaaaaaaattctttgctcgtaaacttgacggaaagtcattcattgatgacatgagattagatcatc |
30826348 |
T |
|
| Q |
216 |
acgattgaacttga |
229 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
30826347 |
atgattgaatttga |
30826334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 30834135 - 30833930
Alignment:
| Q |
24 |
aaaaggaaaggctttcaattgccatgttccatgggctaaaacaagatagtattgtaggtccaatggagagcttgattactgaaaaaacaccaccacggtt |
123 |
Q |
| |
|
|||||||||||||||||||||| | ||||| | | || |||||| ||||||||||||| |||||||||| || |||||| |||||||||| ||||| |
|
|
| T |
30834135 |
aaaaggaaaggctttcaattgctacattccacagcttgaatcaagatggtattgtaggtcctttggagagcttaatcactgaagaaacaccacctcggtt |
30834036 |
T |
|
| Q |
124 |
taaaaaagttggagtagaggaatacttnnnnnnnttctttgctcgtaaacttgaaggaaagtcactcattgatgacatgagattagatcatcacgattga |
223 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| | |||| |||||||||||| |||| ||| | |||||| |
|
|
| T |
30834035 |
caaaaaagttggagtagatgaatactttaagaacttctttgctcgtaaacttgaaggaaaggccttcatcgatgacatgagaatagagcatgatgattga |
30833936 |
T |
|
| Q |
224 |
acttga |
229 |
Q |
| |
|
| |||| |
|
|
| T |
30833935 |
atttga |
30833930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 30825806 - 30825735
Alignment:
| Q |
258 |
gttatgtttggccccgtcttccattgtattttctctttatttatatatgatataatattaggagtatgtttg |
329 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30825806 |
gttatgtttggccccgtcttctattgtattttctctttatttatatatgatataatattaggagtatgtttg |
30825735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 30839702 - 30839549
Alignment:
| Q |
71 |
agtattgtaggtccaatggagagcttgattactgaaaaaacaccaccacggtttaaaaaagttggagtagaggaatacttnnnnnnnttctttgctcgta |
170 |
Q |
| |
|
|||||| ||||||| || | ||||| ||||||||| |||||||| | ||||| |||||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
30839702 |
agtattttaggtcctgtgaaaagcttaattactgaacaaacaccagctcggttcaaaaaagttggagtagaggagtacttcaccaacttatttgctcgta |
30839603 |
T |
|
| Q |
171 |
aacttgaaggaaagtcactcattgatgacatgagattagatcatcacgattgaa |
224 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||| |||| ||| ||||||||| |
|
|
| T |
30839602 |
aacttgagggaaagtcatacattgatgttatgagaatagaacatgacgattgaa |
30839549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University