View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4254_high_12 (Length: 302)
Name: NF4254_high_12
Description: NF4254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4254_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 7561528 - 7561440
Alignment:
| Q |
154 |
cactaacgtaaccctaacttaagccgttagtgcggcaacacatattaccatgaaaaagcatagacaattggttcctaacaaaaacagaa |
242 |
Q |
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| T |
7561528 |
cactaacgtaaccctaacttaagccgttagtgtggcaacacatattaccatgaaaaagcatagacaattggttccttccaaaaacagaa |
7561440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 7561415 - 7561357
Alignment:
| Q |
244 |
aagaacaagaacaacaatttgtgctgctgatttttatttacctgatgactgttggaaac |
302 |
Q |
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| T |
7561415 |
aagaacaagaacaacaatttgtgctgctgatttttatttacctgatgactgttggaaac |
7561357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 7561760 - 7561715
Alignment:
| Q |
118 |
gttcaacttcttcttccttctatttgttttatcaatcactaacgta |
163 |
Q |
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| T |
7561760 |
gttcaacttcttcttccttctatttgttttatcattcactaacgta |
7561715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 7561861 - 7561820
Alignment:
| Q |
17 |
tatgtcaaaaccaacaaacgaatacaatactcgtgattattt |
58 |
Q |
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| T |
7561861 |
tatgtcaagatcaaaaaacgaatacaatactcgtgattattt |
7561820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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