View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4254_high_3 (Length: 373)
Name: NF4254_high_3
Description: NF4254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4254_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 14568192 - 14567904
Alignment:
| Q |
15 |
ttctgcttggtggagcttttgcagtaaatggaagtgtgaatcctgctgctgaaacaaatgtaagtatttccattttgtattcaaattccttgaaataaac |
114 |
Q |
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| T |
14568192 |
ttctgcttggtggagcttttgcagtaaatggaagtgtgaatccttctgctgaaacaaatgtaagtatttccatttttcattcaaattc-ttgaaataaac |
14568094 |
T |
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| Q |
115 |
tccgtaaaacaattacaccgcttaccgcttgatctatctaaattttcagttggatttgattccagatattaggtgatccagatgctgcagatgttgtatt |
214 |
Q |
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| T |
14568093 |
tccataaaactgtcataccgctcaccgcttgatctatctaaattttcagttggatttgattccagatattaggtgatccagatgctgcagatgttgtatt |
14567994 |
T |
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| Q |
215 |
cacaagtggcgcagatgttctcgccgtgggaataaacgttacacaacaagtcgtatttacaggtaccccccattggaactctttgttgat |
304 |
Q |
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| T |
14567993 |
cacaagtggcgcagatgttcttgctgtggggataaacgttacacaacaagtcgtatttacaggtaccccccattggaactctttgttgat |
14567904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 14575890 - 14575619
Alignment:
| Q |
15 |
ttctgcttggtggagcttttgcagtaaatggaagtgtgaatcctgctgctgaaacaaatgtaagtatttccattttgtattcaaattccttgaaataaac |
114 |
Q |
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| T |
14575890 |
ttctacttggtggatctttcgcagtaaatggcaatgtgaatccagctgctgaagcaaatgtaagtatgtctattttgtattcaatttc-ttaatataaat |
14575792 |
T |
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| Q |
115 |
tccgt--aaaacaattacaccgcttaccgcttgat----ctatctaaattttcagttggatttgattccagatattaggtgatccagatgctgcagatgt |
208 |
Q |
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| T |
14575791 |
tccattaaaaaaaatgatatcagtcgctgcttgatatatctatctaactcttcaattggatttgattccagatattcggtgatccagatgctgcagatgt |
14575692 |
T |
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| Q |
209 |
tgtattcacaagtggcgcagatgttctcgccgtgggaataaacgttacacaacaagtcgtatttacaggtacc |
281 |
Q |
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| T |
14575691 |
tgtgttcacaagtggcgcagatatactcgcagtgggaataaatgtcactcaccaagtcgtattgtcaggtacc |
14575619 |
T |
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