View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4254_high_4 (Length: 362)
Name: NF4254_high_4
Description: NF4254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4254_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 3 - 350
Target Start/End: Complemental strand, 40618573 - 40618226
Alignment:
| Q |
3 |
catctatccatattttaaagtaatcaatgatcttctttatatctaatacaaaatcaacatcaacgttatctaactgaaggtctgccaccaaacctaaagc |
102 |
Q |
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| T |
40618573 |
catctatccatgttttaaagtaatcaatgatcttctttatatctaatacaaaatcaacatcaatgttatctaactgaaggtctgccaccaaacctaaagc |
40618474 |
T |
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| Q |
103 |
aatatacaatctcatcgcttcatccacttcgacagcacaaagtggagagaactaatcagttttagtaatgacaaagccaccttcattatctcttatacat |
202 |
Q |
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| T |
40618473 |
aatatacaatctcattgcttcatccacttttacagcacaaagtggagagaactaatcagttttagtaatgacaaagccaccttcattatctcttatacat |
40618374 |
T |
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| Q |
203 |
ataccgagtcctaacttattgagcgacaatgaaaccaatgtatctatattgcacttataccacccatgagtgggttttggccactagtgtgttgctactt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40618373 |
ataccgagtcctaacttattgagcgacaatgaaaccaatgtatctatattgcacttataccacccatgagtgggttttggccactagtgtgttgctaatt |
40618274 |
T |
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| Q |
303 |
tgctcgatcccggctgatcgatggtggtatgaccacgcgttgattcat |
350 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40618273 |
tgcttgatcccggctgatcaatggtggtatgaccacgcgttgattcat |
40618226 |
T |
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