View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4254_high_6 (Length: 355)
Name: NF4254_high_6
Description: NF4254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4254_high_6 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| |
|
| [»] chr6 (12 HSPs) |
| |
|
| [»] scaffold0133 (2 HSPs) |
| |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0144 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 37523 - 37877
Alignment:
| Q |
1 |
cagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37523 |
cagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctgaagtctggtagtgaccaatattgatgcacctttctttccaagttg |
37622 |
T |
|
| Q |
101 |
caacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37623 |
caacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttgaaccttt |
37722 |
T |
|
| Q |
201 |
nnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37723 |
tttttccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacac |
37822 |
T |
|
| Q |
301 |
acacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccat |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823 |
acacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccat |
37877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 16658045 - 16658399
Alignment:
| Q |
1 |
cagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658045 |
cagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttg |
16658144 |
T |
|
| Q |
101 |
caacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16658145 |
caacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttgaaccttt |
16658244 |
T |
|
| Q |
201 |
nnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16658245 |
tttttccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcagtaaactgaaatcatccgaaacac |
16658344 |
T |
|
| Q |
301 |
acacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccat |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16658345 |
acacccatattttcaagtcaaaatgtgtttttaccctttcatcattgaagaccat |
16658399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 16868128 - 16867777
Alignment:
| Q |
1 |
cagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868128 |
cagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttg |
16868029 |
T |
|
| Q |
101 |
caacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
16868028 |
caacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaatactttttgttttgcaaaatttcttgaaccttt |
16867929 |
T |
|
| Q |
201 |
nnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacac |
300 |
Q |
| |
|
| | |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
16867928 |
tttctcaaggtttctaaagacaagagatctagattttttccaatggtgttttctgtgatggactctaaaattttcatcaaactgaaatcgtccgaa--ac |
16867831 |
T |
|
| Q |
301 |
acacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagacca |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16867830 |
acacccatattttcaagtcaaaatgtgtttttaccctttcatcattgaagacca |
16867777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 16837713 - 16838067
Alignment:
| Q |
1 |
cagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
16837713 |
cagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccatttgg |
16837812 |
T |
|
| Q |
101 |
caacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnn |
200 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
16837813 |
caacaaagacttgaacgtattccatttcacttggtcatcactccacacatcatcaagaacaagcaaataccttttgttttgcaaaatttcttgaaccttt |
16837912 |
T |
|
| Q |
201 |
nnnnnccttgactctaaagacaagagatctag-gttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaaca |
299 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837913 |
tttcgcaaggactctaaagacaagagatctagatttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaaca |
16838012 |
T |
|
| Q |
300 |
cacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagacca |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16838013 |
cacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagacca |
16838067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 29 - 355
Target Start/End: Original strand, 17069570 - 17069896
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttc |
128 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||| || ||||||||||| |
|
|
| T |
17069570 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgactaaaattgatgcacctttctttccatttggtaacaaagacttgaagctattccatttc |
17069669 |
T |
|
| Q |
129 |
tcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagat |
228 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
17069670 |
acttggtcatcactccacacatcatcaagaacaagcaaataccttttgctttgcaaaatttcttgaacctttttttgccttgactctaaagacaagagat |
17069769 |
T |
|
| Q |
229 |
ctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgt |
328 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069770 |
ctagattttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgt |
17069869 |
T |
|
| Q |
329 |
ttttaccctttcatcattgtagaccat |
355 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17069870 |
ttttaccctttcatcattgtagaccat |
17069896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 16797202 - 16797555
Alignment:
| Q |
1 |
cagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttg |
100 |
Q |
| |
|
|||||||| ||| |||| ||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
16797202 |
cagataaccgtgttaaatgatgaacataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttctttccatttgg |
16797301 |
T |
|
| Q |
101 |
caacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnn |
200 |
Q |
| |
|
|||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||| |
|
|
| T |
16797302 |
caacaatgacttgaacgtattccatttcacttggtcatcactccacacatcatcaagaacaagcaaatacctttggttttgcaaaatttcttgaaccttt |
16797401 |
T |
|
| Q |
201 |
nnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacac |
300 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16797402 |
tttcgcaaggactctaaagacaagagttctagattttttccaatggtgttttctatgatagactctaaaattttcatcaaactgaaatcatccgaaacac |
16797501 |
T |
|
| Q |
301 |
acacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagacca |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16797502 |
acacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagacca |
16797555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 29 - 355
Target Start/End: Original strand, 16987518 - 16987844
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttc |
128 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||||| ||| | |||||||| |||||| ||||||||||||||| |
|
|
| T |
16987518 |
agttcccatgatggatgcaacattgtcaagtctggtggtgaccaaaactgatgcacctttcgttctattttgcaacacagacttgaacttattccatttc |
16987617 |
T |
|
| Q |
129 |
tcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagat |
228 |
Q |
| |
|
||| |||||||| |||| ||||||||||||||||| ||||||||||||||||| | ||| |||||||| | |||||||||||||| |||||| |
|
|
| T |
16987618 |
tctcggtcttcagtccacacatcatcaagaacaagtaaataccttttgttttgtagaatttcttgaacatttttttgcattgactctaaagacgagagat |
16987717 |
T |
|
| Q |
229 |
ctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgt |
328 |
Q |
| |
|
| | ||||||||||| |||||||| ||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16987718 |
gtggattttttccaatagtgttttcaatgatcgactctaaaactttcatcatactgaaatcatcagaaacacacacccatattttcaagtcaaaatgtgt |
16987817 |
T |
|
| Q |
329 |
ttttaccctttcatcattgtagaccat |
355 |
Q |
| |
|
||||| |||||||||||| ||||||| |
|
|
| T |
16987818 |
ctttacactttcatcattgaagaccat |
16987844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 29 - 354
Target Start/End: Complemental strand, 18873287 - 18872956
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattc |
122 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||| |||||| ||| |||| |||| |||| |
|
|
| T |
18873287 |
agttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccatttccacgttgcagaaaatacttgaactgattc |
18873188 |
T |
|
| Q |
123 |
catttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagaca |
222 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||||| || |||| | |||| ||||||||| |
|
|
| T |
18873187 |
catttctcttggtcttcattccacacatcatcaagaacaagtagataccttttgttttgcaaaatatttttaaccttcttttgcattgattctaaagacg |
18873088 |
T |
|
| Q |
223 |
agagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaa |
322 |
Q |
| |
|
|||||||| | ||||||||| |||| |||||||||||||| |||| |||||||| ||| ||||| || ||||||||||||||||||||||||| ||| |
|
|
| T |
18873087 |
agagatctggattttttccatcggtggattctatgatggactgcaaaactttcatcatactaaaatcctcagaaacacacacccatattttcaagttaaa |
18872988 |
T |
|
| Q |
323 |
atgtgtttttaccctttcatcattgtagacca |
354 |
Q |
| |
|
||||| | |||||||||||||||| |||||| |
|
|
| T |
18872987 |
gtgtgtatctaccctttcatcattgaagacca |
18872956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 29 - 347
Target Start/End: Complemental strand, 18806293 - 18805969
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattc |
122 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||| ||| |||| |||| |||| |
|
|
| T |
18806293 |
agttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaattgatgcacctttcgtgccatttccacgttgcagaaaatacttgaactgattc |
18806194 |
T |
|
| Q |
123 |
catttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagaca |
222 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||| | |||||| | |||| ||||||||| |
|
|
| T |
18806193 |
catttctcttggtcttcattccacacatcatcaagaacaagtagataccttttgttttgcaaaattttttgaacttccttttgcattgattctaaagacg |
18806094 |
T |
|
| Q |
223 |
agagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaa |
322 |
Q |
| |
|
|||||||| | ||||||||| || | |||||||||||||| |||| |||||||| ||| ||||| || ||||||||||||||||||||||||| ||| |
|
|
| T |
18806093 |
agagatctggactttttccaacggcggattctatgatggactgcaaaactttcatcatactaaaatcctcagaaacacacacccatattttcaagttaaa |
18805994 |
T |
|
| Q |
323 |
atgtgtttttaccctttcatcattg |
347 |
Q |
| |
|
||||| | |||||||||||||||| |
|
|
| T |
18805993 |
gtgtgtatctaccctttcatcattg |
18805969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 29 - 342
Target Start/End: Original strand, 16788031 - 16788342
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttc |
128 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| || || ||||||||||||||| ||||||||||||||| |
|
|
| T |
16788031 |
agttgccatgatggatgcaacaatgtcaagtcgtgcagtgaccaaaattgatgcacctttcgtttcatattgcaacaaagacttgaacttattccatttc |
16788130 |
T |
|
| Q |
129 |
tcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagat |
228 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| | ||||||||||||||| ||||| ||||||||| | ||||||| ||||| |||||| |
|
|
| T |
16788131 |
tcttggtcttcattccacacatcatcaagaacaagtagataccttttgttttg-aaaatttcttgaaccttctttcgcattgactccaaagatgagagat |
16788229 |
T |
|
| Q |
229 |
ctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgt |
328 |
Q |
| |
|
|| | ||||||||||| |||| |||||||| || |||||||| ||||||| ||||||||||| |||||| | | ||||||||||| ||||||||| | |
|
|
| T |
16788230 |
ctggattttttccaattgtgtcttctatgacgg-ctctaaaaccttcatcatgctgaaatcatctgaaacaaaaatccatattttcaggtcaaaatggtt |
16788328 |
T |
|
| Q |
329 |
ttttaccctttcat |
342 |
Q |
| |
|
| |||| ||||||| |
|
|
| T |
16788329 |
tcttactctttcat |
16788342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 354
Target Start/End: Original strand, 16843925 - 16844222
Alignment:
| Q |
63 |
gtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaa |
156 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| |||||| |||||| | ||||||| |||||| | |||||||||| |||||||||| |||| |
|
|
| T |
16843925 |
gtagtgaccaaaactgatgcaccttttgttccatttccacattgcaaaaaagacatgaacttatcccatttatgttggtcttcattccaaacatcgtcaa |
16844024 |
T |
|
| Q |
157 |
gaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctat |
256 |
Q |
| |
|
| ||||| |||||||||||||||||||||||| ||||||| | ||| | ||||| | |||| | | | ||||| ||| || ||||| |
|
|
| T |
16844025 |
ggacaagtaaataccttttgttttgcaaaatagtttgaaccttttcttgcattgcttgtaaagtcgagaggtttggatttttcccatctttggattctac |
16844124 |
T |
|
| Q |
257 |
gatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagacca |
354 |
Q |
| |
|
||| |||| ||||| ||||||| ||| |||||||| |||||||| |||||||||||||| |||||| || |||||||| ||||||||| |||||| |
|
|
| T |
16844125 |
gatcgactgcaaaatcttcatcatactaaaatcatcagaaacacaaacccatattttcaaaggaaaatgagtatttaccctctcatcattgaagacca |
16844222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 16781422 - 16781494
Alignment:
| Q |
282 |
ctgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagacca |
354 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| |||||||| || |||| |||||||| ||||| |||| |
|
|
| T |
16781422 |
ctgaaatcatctgaaacacaaacccatattttcaaatcaaaatgggtggttacgctttcatccttgtatacca |
16781494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 16781163 - 16781223
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc |
89 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||| ||||| |||| ||||||| |
|
|
| T |
16781163 |
agttcccatgatggatgcaacaatatcaagtcgtgttgtgactaaaatagatgaacctttc |
16781223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 355
Target Start/End: Original strand, 12913 - 13239
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttc |
128 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
12913 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttctttccatgttgcaacgaagacttgaacttattccatttc |
13012 |
T |
|
| Q |
129 |
tcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagat |
228 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||| |
|
|
| T |
13013 |
tcttggtcttcactccacacatcatcaagaacaagcaaataccttttgttttgcaaaatttcttgaaccttttttcgcattgactctaaagaggagagat |
13112 |
T |
|
| Q |
229 |
ctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgt |
328 |
Q |
| |
|
| | |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13113 |
ttggattttttccaatggtgtcttctatgatggactctaaaaccttcatcatactgaaatcatcagaaacacacacccatattttcaagtcaaaatgtgt |
13212 |
T |
|
| Q |
329 |
ttttaccctttcatcattgtagaccat |
355 |
Q |
| |
|
||||| |||||||||||| ||||||| |
|
|
| T |
13213 |
ctttacactttcatcattgaagaccat |
13239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 29 - 352
Target Start/End: Original strand, 8571 - 8894
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttc |
128 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
8571 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctttccatttagcaacaaagactttaacttattccatttc |
8670 |
T |
|
| Q |
129 |
tcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagat |
228 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||||||| |||||||| || ||||||||||| ||||||||| | |||||||||||||| |||||| |
|
|
| T |
8671 |
tctttgtcttcagtccacacatcatcaagaacaagtaaatacctatttttttgcaaaatttcttgaaccttttgttgcattgactctaaagacgagagat |
8770 |
T |
|
| Q |
229 |
ctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgt |
328 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8771 |
gtggattttttccaatggtgttttctatgatggactctaaaactttcatcgcattgatatcaccagaaacacacacccatattttcaagtcaaaatgtgt |
8870 |
T |
|
| Q |
329 |
ttttaccctttcatcattgtagac |
352 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
8871 |
ctttaccctttcatcattgaagac |
8894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 9417 - 9741
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattc |
122 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||| |||||| ||| |||| |||| |||| |
|
|
| T |
9417 |
agttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccatttccacgttgcagaaaatacttgaactgattc |
9516 |
T |
|
| Q |
123 |
catttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagaca |
222 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| | ||| ||||| ||||||||||||| || |||| | |||| ||||||||| |
|
|
| T |
9517 |
catttctcttggtcttcaatccacacatcatcaagaacaagtagatatcttttattttgcaaaatatttttaaccttcttttgcattgattctaaagacg |
9616 |
T |
|
| Q |
223 |
agagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaa |
322 |
Q |
| |
|
|||||||| | ||||||||| |||| |||||||||||||| |||| |||||||| | | ||||| || ||||||||||||||||||||||||| ||| |
|
|
| T |
9617 |
agagatctggattttttccatcggtggattctatgatggactgcaaaactttcatcatattaaaatcctcagaaacacacacccatattttcaagttaaa |
9716 |
T |
|
| Q |
323 |
atgtgtttttaccctttcatcattg |
347 |
Q |
| |
|
||||| | |||||||||||||||| |
|
|
| T |
9717 |
gtgtgtatctaccctttcatcattg |
9741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 4737 - 5061
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattc |
122 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||| |||||| ||| |||| |||| |||| |
|
|
| T |
4737 |
agttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccatttccacgttgcagaaaatacttgaactgattc |
4836 |
T |
|
| Q |
123 |
catttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagaca |
222 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| | ||| ||||||||||||||||||| || |||| | |||| ||||||||| |
|
|
| T |
4837 |
catttctcttggtcttcattccacacatcatcaagaacaagtagatatcttttgttttgcaaaatatttttaaccttcttttgcattgattctaaagacg |
4936 |
T |
|
| Q |
223 |
agagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaa |
322 |
Q |
| |
|
|||||||| | ||||||||| |||| |||||||||||||| |||| |||||||| | | ||||| || ||||||||||||||||||||||||| ||| |
|
|
| T |
4937 |
agagatctggattttttccatcggtggattctatgatggactgcaaaactttcatcatattaaaatcctcagaaacacacacccatattttcaagttaaa |
5036 |
T |
|
| Q |
323 |
atgtgtttttaccctttcatcattg |
347 |
Q |
| |
|
||||| | ||||||||| |||||| |
|
|
| T |
5037 |
gtgtgtatctaccctttcctcattg |
5061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 354
Target Start/End: Complemental strand, 7053363 - 7053032
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagt------tgcaacaaagactttaacttattc |
122 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |||||||| |||||||||| ||||||| || || | ||||||||| |||| ||||| | | |
|
|
| T |
7053363 |
agttcccatgatagatgcaacaatttcaagtcttgtagtgactaaaattgatgaacctttccttgtaattgcagactgcaacaaaaacttgaacttgtac |
7053264 |
T |
|
| Q |
123 |
catttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagaca |
222 |
Q |
| |
|
||||| | ||||||||| ||||||||||||| | ||||| |||||||||||| ||||||||| ||||||||| | | || |||| ||| |
|
|
| T |
7053263 |
catttaccatggtcttcattccaaacatcatctaatacaagtaaataccttttgctttgcaaaacttcttgaacctttttttgcatggattctagagaag |
7053164 |
T |
|
| Q |
223 |
agagatctaggttttt-tccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaa |
321 |
Q |
| |
|
|||||| |||| |||| ||| ||| |||||||||||| | || ||||| |||| ||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
7053163 |
agagat-taggattttgtcctgtggcagattctatgatggagtgtaggattttaatcatgctgaaatcatctgaaacacaaacccatattttcaagtcaa |
7053065 |
T |
|
| Q |
322 |
aatgtgtttttaccctttcatcattgtagacca |
354 |
Q |
| |
|
|||| || |||| |||||||| || ||||||| |
|
|
| T |
7053064 |
aatgggtgcttacactttcatcgttatagacca |
7053032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 354
Target Start/End: Complemental strand, 38939456 - 38939125
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |||||| |||||| | ||| ||| ||| ||||| | | |
|
|
| T |
38939456 |
agttcccatgatggatgcaacaatctcaagtcgtgttgtgactaaaatagatgcccctttcgttgtatttccactcttcaaaaaatgcttcaacttttcc |
38939357 |
T |
|
| Q |
123 |
catttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagaca |
222 |
Q |
| |
|
||||| |||| |||| |||| |||||||| || ||||| |||||||||||| ||||||||| |||||||| | |||| || |||| || |
|
|
| T |
38939356 |
cattttacttgttcttggttccacacatcatccagtacaagtaaataccttttgctttgcaaaacttcttgaacttttttttgcattgattccaaagtca |
38939257 |
T |
|
| Q |
223 |
agagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaa |
322 |
Q |
| |
|
||| || | |||| |||| ||| |||||||||||| | || |||||||||| ||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
38939256 |
agaaattatgattttgtccagtggcagattctatgatggagtgtaggattttcatcatgctgaaatcatctgaaacacaaacccatattttcaaatcaaa |
38939157 |
T |
|
| Q |
323 |
atgtgtttttaccctttcatcattgtagacca |
354 |
Q |
| |
|
||| || |||| ||||||| |||||||||| |
|
|
| T |
38939156 |
atgggtggttacgctttcattgttgtagacca |
38939125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 13378155 - 13378328
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttcttt------ccaagttgcaacaaagactttaacttattc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||| || ||| |||||||||| |||| ||||| | | |
|
|
| T |
13378155 |
agttcccatgatggatgcaacaatctcaagtcgcgtagtgactaaaattgatgatcctttccttgtaatgccacattgcaacaaaaacttgaacttttcc |
13378254 |
T |
|
| Q |
123 |
catttctcttggtcttcactccaaacatcatcaagaacaagaaaataccttttgttttgcaaaatatcttgaac |
196 |
Q |
| |
|
||||| | ||||||||| |||| |||||||| || ||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
13378255 |
catttaacatggtcttcattccacacatcatctagtacaagtaaataccttttgctttgcaaaacttcttgaac |
13378328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 13378402 - 13378454
Alignment:
| Q |
270 |
attttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaa |
322 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
13378402 |
attttcttcatactgaaatcatcagaaacacaaacccatattttcaagtcaaa |
13378454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 9436 - 9539
Alignment:
| Q |
251 |
ttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtag |
350 |
Q |
| |
|
|||||||||||| | || |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| || |||| ||||| || ||||| |
|
|
| T |
9436 |
ttctatgatggagtgtaggattttcatcatgctgaaatcatctgaaacacaaacccatattttcaaatcaaaatgggtggttacgctttcttcgttgtaa |
9535 |
T |
|
| Q |
351 |
acca |
354 |
Q |
| |
|
|||| |
|
|
| T |
9536 |
acca |
9539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 9208 - 9268
Alignment:
| Q |
29 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc |
89 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
9208 |
agttcccatgatggatgcaacaatatcaagtcgtgttgtgactaaaatagatgcacctttc |
9268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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