View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4254_high_7 (Length: 354)
Name: NF4254_high_7
Description: NF4254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4254_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 4 - 309
Target Start/End: Original strand, 30826625 - 30826929
Alignment:
| Q |
4 |
tgtgatgtaagtagatcatatttacaaagaaaattaggtctaaattgtaaaaataaatgacaatctctagtgatttgaaagttatatatatgaattatgc |
103 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30826625 |
tgtgatgtaagtatatcatatttaaaaagaaaattaggtctaaattgtaaaaataaatgacaatctctagtgatttgaaagttatatatatgaattatgc |
30826724 |
T |
|
| Q |
104 |
tagcaaaacacttttctcaaacgttttccttatcaattatatgcctcctcgccaaactctagttgcagttaaacatcaacaagcctacgcttattcaatc |
203 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
30826725 |
taggaaaacacttttctcaaacgttttccttatcaattatatgcctcctcgccaaattctagttgcagttcaacatcaacaagcctatgcttattcaatc |
30826824 |
T |
|
| Q |
204 |
ttctatgttcatccgagtgaaggatgaaattcaatcaccattattcctttactcatttgatccaattaacttgattggagcaggtctgaggcaacgagct |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
30826825 |
ttctatgttcatccgagtgaaggatgaaattcaatcaccattattcctttactcatttgatccaattaacttgattggagcaggtct-atgcaacgagct |
30826923 |
T |
|
| Q |
304 |
cttggt |
309 |
Q |
| |
|
|||||| |
|
|
| T |
30826924 |
cttggt |
30826929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University