View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4254_high_8 (Length: 346)
Name: NF4254_high_8
Description: NF4254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4254_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 4 - 326
Target Start/End: Original strand, 54820487 - 54820811
Alignment:
| Q |
4 |
ggaggagcagagaatttgaccttgagcttagcttcatcacttttggggtcagccttataagcacttccttctatagaggttcttttaccattattccaag |
103 |
Q |
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| T |
54820487 |
ggaggaacatagaatttgaccttgagcttagcttcatcacttttggggtcagccttataagcacttccttctatagaggttcttttaccattattccaag |
54820586 |
T |
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| Q |
104 |
tctcattgagaacatgaacagtcccatcactgtttagagtgtatgtggctcttgtgttctctccatttttgggctgaaagaatgaagggaaagaagctat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54820587 |
tctcattgagaacatgaacagtcccatcactgtttagagtgtatgtggctcttgtgttctctccatttttgggctgaaagaatgaagggaaagaagctat |
54820686 |
T |
|
| Q |
204 |
ttcgtaccatcgacccatgtacctctccaagtctacacccttcacaacctccttgtccttccctacggtgtttcccattttttg--ttgtggatgttatt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54820687 |
ttcgtaccatcgacccatgtacctctccaagtctacacccttcacaacctccttgtccttccctacggtgtttcccattttttgctgtgtggatgttatt |
54820786 |
T |
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| Q |
302 |
gcttcctctatttcaggtatagaga |
326 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
54820787 |
gcttcctctatttcaggtatagaga |
54820811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 54849274 - 54849508
Alignment:
| Q |
20 |
tgaccttgagcttagcttcatcacttttggggtcagccttataagcacttccttctatagaggttcttttaccattattccaagtctcattgagaacatg |
119 |
Q |
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| T |
54849274 |
tgaccttgagtttggcttcatcactattagggtcagccttataagcaatgccatgtatagactctcttttaccattattccaagtctcatttagaacatc |
54849373 |
T |
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| Q |
120 |
aacagtcccatcactgtttagagtgtatgtggctcttgtgttctctccatttttgggctgaaagaatgaagggaaagaagctatttcgtaccatcgaccc |
219 |
Q |
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| T |
54849374 |
cacagtgccattactgttgagaatgtatgtggctctagtgttctctccatttgtgggctgaaaaaatgaagggaaagaagctatttcgtaccatcgaccc |
54849473 |
T |
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| Q |
220 |
atgtacctctccaagtctacacccttcacaacctc |
254 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
54849474 |
atgtacctctccaagtctacacctttcacaacctc |
54849508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 54817580 - 54817739
Alignment:
| Q |
4 |
ggaggagcagagaatttgaccttgagcttagcttcatcacttttggggtcagccttataagcacttccttctatagaggttcttttaccattattccaag |
103 |
Q |
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|||||| || ||||||||||||| || ||||| |||||||| || || ||||| ||||||||| | ||||| || | ||||||| ||| | |||||| |
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| T |
54817580 |
ggaggaacatagaatttgaccttaagtttagcctcatcactattaggatcagctttataagcagtaccttcaatgtaacttctttttccaccactccaag |
54817679 |
T |
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| Q |
104 |
tctcattgagaacatgaacagtcccatcactgtttagagtgtatgtggctcttgtgttct |
163 |
Q |
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||||||| ||||||| ||||| |||||| | |||||||| || ||||||||||||| |
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| T |
54817680 |
tctcattcagaacattcacagttccatcatctctcagagtgtaggttgctcttgtgttct |
54817739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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