View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4254_low_1 (Length: 473)
Name: NF4254_low_1
Description: NF4254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4254_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Original strand, 5017302 - 5017746
Alignment:
| Q |
20 |
agcaacagtagtagtaattcttcgcctgacaatgtgcctaactcaaatcctcaacaaccatcaatgtttcagtggccttgttttcctcagactgccactc |
119 |
Q |
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| T |
5017302 |
agcaacagtagtagtaattattcgcctgacaatgtgcctaactcaaatcctcaacaaccatcaatgtttcattggccttgttttcctcagactgccactc |
5017401 |
T |
|
| Q |
120 |
aagcaccatggcagcagcagttaccatatcctcaacaaggggctcaggtatttcagccgactcagctgttcggagcaaccatccctcccatttttcagac |
219 |
Q |
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| T |
5017402 |
aagcaccatggcagcagcagttaccatatcctcaacaaggggcgcaggtatttcagccgactcagctgttcggagcaaacatccctcccatttttcagac |
5017501 |
T |
|
| Q |
220 |
attcaatggtaatggctggcaagcatttcctgttgcatcggaagctactaccacagcaacacataacttagttcctaatatgttctaccatgctggatac |
319 |
Q |
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| T |
5017502 |
attcaatggtaatggctggcaagcatttcctgttgcatcggaagctactaccacagcaacacataacttagttcctaatatgttctaccatgctggatac |
5017601 |
T |
|
| Q |
320 |
acatttcctggatttccaggtttgtatgcaactttttctcttcagatgacttgtccttactgggatatccaggattgaacataatgatctatactgattg |
419 |
Q |
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| T |
5017602 |
acatttcccggatttccaggtttgtatgcaactttttctcttcagatgacttgtccttactgggatttccaggattgaacataatgatctatactgattg |
5017701 |
T |
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| Q |
420 |
atatatcattttgtataaacttttaaaactcatttttagtattat |
464 |
Q |
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| T |
5017702 |
atatatcattttgtataaactcttaaaactcatttttagtattat |
5017746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 5005553 - 5005605
Alignment:
| Q |
191 |
ggagcaaccatccctcccatttttcagacattcaatggtaatggctggcaagc |
243 |
Q |
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| T |
5005553 |
ggagcaaatatccctcccatttttcagacattcaatgttaatggctggcaagc |
5005605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 5005614 - 5005661
Alignment:
| Q |
324 |
ttcctggatttccaggtttgtatgcaactttttctcttcagatgactt |
371 |
Q |
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| T |
5005614 |
ttcctggctttccaggtatgtatggaactttttctcttcatatgactt |
5005661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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