View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4255_high_1 (Length: 667)
Name: NF4255_high_1
Description: NF4255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4255_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 32265544 - 32265826
Alignment:
| Q |
1 |
cataccaaataaaagatatact-aaattgttaaaagaacaaaaacaaaaatcattaacccacatggctttctgtacattgcaaatgctttcatcatatgt |
99 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265544 |
cataccaaataaaagatatacttaaattgttaaaagaacaaaaacaaaaatcattaacccacatggctttctgtacattgcaaatgctttcatcatatgt |
32265643 |
T |
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| Q |
100 |
gataatgcca----acnnnnnnnnnnnnnnnncattcttaaaattcaagatattcatcaatgtacctcaatagaagaagatgcttcaaaaaatgatgtaa |
195 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265644 |
gataatgccaaaaaaaaaaagaaaaaaaaaacaattcttaaaattcaagatattcatcaatgtacctcaatagaagaagatgcttcaaaaaatgatgtaa |
32265743 |
T |
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| Q |
196 |
aagtaaaaaccaagataacccattaagccatttcccttattcatcaacaggagcaggtagattgagatcaatcaaacaaggaa |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265744 |
aagtaaaaaccaagataacccattaagccatttcccttattcatcaacaggagcaggtagattgagatcaatcaaacaaggaa |
32265826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 487 - 656
Target Start/End: Original strand, 32266026 - 32266195
Alignment:
| Q |
487 |
attcacagctttactgttatgagattttgcagcaggaaaagaatcactttctgaactgttttcttcatcactctcaacatctgttgttgaatcataagaa |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266026 |
attcacagctttactgttatgagattttgcagcaggaaaagaatcactttctgaactgttttcttcatcactctcaacatctgttgttgaatcataagaa |
32266125 |
T |
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| Q |
587 |
atatcattgtccttttcataatcaaaaaactcatatttcaaacatttgctaccattctcatagatttctt |
656 |
Q |
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| T |
32266126 |
atatcattgtccttttcataatcaaaaaactcatatttcaaacttttgctaccattctcatagatttctt |
32266195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 307 - 417
Target Start/End: Original strand, 32265846 - 32265956
Alignment:
| Q |
307 |
ttgtttgatcacaaaagtgttctcttcagatcctccaacaaaatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttataacaaatt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
32265846 |
ttgtttgatcacaaaagtgttctcttcagatcctccaacaaaatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttgtagcaaatt |
32265945 |
T |
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| Q |
407 |
ggacattcata |
417 |
Q |
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||||||||||| |
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| T |
32265946 |
ggacattcata |
32265956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 416
Target Start/End: Original strand, 19300380 - 19300482
Alignment:
| Q |
314 |
atcacaaaagtgttctcttcagatcctccaacaaaatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttataacaaattggacatt |
413 |
Q |
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||||||| |||||| || ||| |||||||| |||||| |||||||| || || ||||| |||||||||||| ||||||| || | ||||||||||||| |
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| T |
19300380 |
atcacaagagtgttatcatcatttcctccaataaaatgggatcttttgtgaccccctaaagcttgtcctgacttgaaaatcttgttgcaaattggacatt |
19300479 |
T |
|
| Q |
414 |
cat |
416 |
Q |
| |
|
||| |
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|
| T |
19300480 |
cat |
19300482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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