View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4255_high_13 (Length: 235)
Name: NF4255_high_13
Description: NF4255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4255_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 10797337 - 10797132
Alignment:
| Q |
14 |
cagagacagttgaaaagatatcatttgaagcgaaattggttgaaggcccaaatggagggtctattggaaagacgacagttaaataccaaaccaaaggaga |
113 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10797337 |
cagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaaggaga |
10797238 |
T |
|
| Q |
114 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10797237 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
10797138 |
T |
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| Q |
214 |
taatcc |
219 |
Q |
| |
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|||||| |
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| T |
10797137 |
taatcc |
10797132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 50070524 - 50070319
Alignment:
| Q |
14 |
cagagacagttgaaaagatatcatttgaagcgaaattggttgaaggcccaaatggagggtctattggaaagacgacagttaaataccaaaccaaaggaga |
113 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50070524 |
cagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctattggaaagacgaccgttaaataccaaaccaaaggaga |
50070425 |
T |
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| Q |
114 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
213 |
Q |
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| T |
50070424 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
50070325 |
T |
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| Q |
214 |
taatcc |
219 |
Q |
| |
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|||||| |
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| T |
50070324 |
taatcc |
50070319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 50078927 - 50078722
Alignment:
| Q |
14 |
cagagacagttgaaaagatatcatttgaagcgaaattggttgaaggcccaaatggagggtctattggaaagacgacagttaaataccaaaccaaaggaga |
113 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50078927 |
cagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaaggaga |
50078828 |
T |
|
| Q |
114 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50078827 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
50078728 |
T |
|
| Q |
214 |
taatcc |
219 |
Q |
| |
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|||||| |
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| T |
50078727 |
taatcc |
50078722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 13501504 - 13501575
Alignment:
| Q |
145 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa |
216 |
Q |
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|||||||| |||||||||| ||||||||||||| |||||||||| |||||| |||||| ||||||||||| |
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| T |
13501504 |
ggcaaagctaagggtgatggtcttttcaaggcccttgagggttactgtttggctaatcctgattacaactaa |
13501575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 13515307 - 13515378
Alignment:
| Q |
145 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa |
216 |
Q |
| |
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|||||||| |||||||||| |||||||||||| || |||||||| |||||| |||||| ||||||||||| |
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| T |
13515307 |
ggcaaagctaagggtgatggtcttttcaaggctatagagggttactgtttggctaatcctgattacaactaa |
13515378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 13541874 - 13541914
Alignment:
| Q |
170 |
tcaaggccattgagggttatgttttggccaatcctaattac |
210 |
Q |
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|||||||||||||||||||||||||||| || ||||||||| |
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| T |
13541874 |
tcaaggccattgagggttatgttttggcaaaccctaattac |
13541914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 13485788 - 13485853
Alignment:
| Q |
145 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac |
210 |
Q |
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|||||||| | |||||||| |||||||||||| |||| ||||| |||||||| |||||| ||||| |
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| T |
13485788 |
ggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctgattac |
13485853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 13509549 - 13509614
Alignment:
| Q |
145 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac |
210 |
Q |
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|||||||| | |||||||| ||||||||| || |||| |||||||||||||| |||||| ||||| |
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| T |
13509549 |
ggcaaagctaggggtgatggtcttttcaaagctcttgaaggttatgttttggcaaatcctgattac |
13509614 |
T |
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