View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4255_high_5 (Length: 363)
Name: NF4255_high_5
Description: NF4255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4255_high_5 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 27499568 - 27499238
Alignment:
| Q |
17 |
atatcaaggattttggattgccacaaaaattctccaaggtgttttatcttgtcaaaagcactttcgagccctagattcagatatcatcttagttaccgct |
116 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27499568 |
atatcaaggattttggattgccacaaaaaaatttcaaggtgttttatcttgtcagaagcactttcaagccctagattcagatatcatcttagttaccgct |
27499469 |
T |
|
| Q |
117 |
cccaaatcaggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcataacaaccatcctttgctcacttcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27499468 |
cccaaatcaggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcataacaaccatcctttgctcatttcca |
27499369 |
T |
|
| Q |
217 |
atccccatactcttgttcccttcttggagattaacctttacattgtcaaagactatgttccaaaccttaactctttatctcatccaagactcttctccac |
316 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27499368 |
atccccattctcttgttcccttcttggagattgacctttacagtgataaagactatgttcctaaccttaactctttatctcatccaagactcttctccac |
27499269 |
T |
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| Q |
317 |
acatattccttgtgctttgttgccaaaatct |
347 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27499268 |
acatattccttgtgctttgttgccaaaatct |
27499238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 27504352 - 27504592
Alignment:
| Q |
17 |
atatcaaggattttggattgccacaaaaattctccaaggtgttttatcttgtcaaaagcactttcgagccctagattcagatatcatcttagttaccgct |
116 |
Q |
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|||||||||||||||| |||| | || ||||||||||||| |||||||| |||||||||||||| |||| | ||| ||||||| ||||||||||| | |
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| T |
27504352 |
atatcaaggattttggtttgctcccaagattctccaaggtgctttatcttttcaaaagcactttcaagccattgatacagatattatcttagttacaaat |
27504451 |
T |
|
| Q |
117 |
cccaaatcaggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcataacaaccatcctttgctcacttcca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| || |||||||| |||||||||| |
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| T |
27504452 |
cccaaatcaggtaccacttggctcaaagcattgacttttgctttgataaaccgtaacaaatatccaaatattcataaaaatcatcctttactcacttcca |
27504551 |
T |
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| Q |
217 |
atccccatactcttgttcccttcttggagattaacctttac |
257 |
Q |
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| || ||| ||||||||| ||| ||||||||||||||||| |
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| T |
27504552 |
accctcatgttcttgttcctttcatggagattaacctttac |
27504592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 27504634 - 27504683
Alignment:
| Q |
299 |
tccaagactcttctccacacatattccttgtgctttgttgccaaaatctt |
348 |
Q |
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||||||| ||||||||||||| | ||||| || ||||||||||||||||| |
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| T |
27504634 |
tccaagaatcttctccacacacaatccttatgttttgttgccaaaatctt |
27504683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 11439598 - 11439265
Alignment:
| Q |
17 |
atatcaaggattttggattgccacaaaaattctccaaggtgttttatcttgtcaaaagcactttcgagccctagattcagatatcatcttagttaccgct |
116 |
Q |
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|||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||| ||||||| |||||| || |||||||| ||||||||||| || |
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| T |
11439598 |
atatcaaggattttggattggcacgagaattcttcaaggtgttttatcttgtcaaaaacactttcaagcccttaatacagatatcctcttagttaccact |
11439499 |
T |
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| Q |
117 |
cccaaatcaggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcataa---caaccatcctttgctcactt |
213 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||| || ||||||||| ||| |||||||| ||||||| |
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| T |
11439498 |
cccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatttcaatcatcctttactcactt |
11439399 |
T |
|
| Q |
214 |
ccaatccccatactcttgttcccttcttggagattaacctttacattgtcaaagactatgttccaaaccttaactctttatctcatccaagactcttctc |
313 |
Q |
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| || || ||| |||||| |||||||||||| || |||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| | |
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| T |
11439398 |
caaaccctcatgttcttgtccccttcttggaggttgacctttactatgataaagattatgttcctaacctcaattcattatcccctccaagactctttgc |
11439299 |
T |
|
| Q |
314 |
cacacatattccttgtgctttgttgccaaaatct |
347 |
Q |
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||||| ||||| | || ||||||||||||||| |
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| T |
11439298 |
aacacacattccatatgagttgttgccaaaatct |
11439265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 11318022 - 11317784
Alignment:
| Q |
17 |
atatcaaggattttggattgccacaaaaattctccaaggtgttttatcttgtcaaaagcactttcgagccctagattcagatatcatcttagttaccgct |
116 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||||| |||||||||||| ||||| |||| |||||| ||| | |||||| || |||||||| || |
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| T |
11318022 |
atatcaaggattttggcttaccacaaggattctccaaggtactttatcttgtcataagcaatttcaagcccttgatactgatatcctcatagttaccact |
11317923 |
T |
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| Q |
117 |
cccaaatcaggtaccacttggctcaaagcattgac-ttttgctttgctaaaccgcaacaaatatccaattattcat---------aacaaccatcctttg |
206 |
Q |
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|| ||| |||| ||||||||||| ||||||||||| ||||||||||||||| ||| |||||||| |||||||| || ||||||||||| ||| |
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| T |
11317922 |
ccaaaagcaggcaccacttggcttaaagcattgactttttgctttgctaaatcgcgacaaatattcaattattgatcatactaagaacaaccatccattg |
11317823 |
T |
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| Q |
207 |
ctcacttccaatccccatactcttgttcccttcttggag |
245 |
Q |
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|||||| ||||||| ||| |||||||||||| |||||| |
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| T |
11317822 |
ctcactaccaatcctcatggtcttgttccctttttggag |
11317784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 15460773 - 15460911
Alignment:
| Q |
124 |
caggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcat---aacaaccatcctttgctcacttccaatcc |
220 |
Q |
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||||||||||||||||||||||||||| ||| || ||||| ||||| || | |||||||| ||||||| ||||||||||||||||||||| |||| || |
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| T |
15460773 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcatgataacaaccatcctttgctcactaccaaccc |
15460872 |
T |
|
| Q |
221 |
ccatactcttgttcccttcttggagattaacctttacat |
259 |
Q |
| |
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||| ||||||||| ||||||||| ||| ||||||||| |
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| T |
15460873 |
tcatgttcttgttcctttcttggagcttagcctttacat |
15460911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 1419 - 1281
Alignment:
| Q |
124 |
caggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcat---aacaaccatcctttgctcacttccaatcc |
220 |
Q |
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||||||||||||||||||||||||||| ||| || ||||| ||||| || | |||||||| ||||||| ||||||||||||||||||||| |||| || |
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| T |
1419 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcatgataacaaccatcctttgctcactaccaaccc |
1320 |
T |
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| Q |
221 |
ccatactcttgttcccttcttggagattaacctttacat |
259 |
Q |
| |
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||| ||||||||| ||||||||| ||| ||||||||| |
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| T |
1319 |
tcatgttcttgttcctttcttggagcttagcctttacat |
1281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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