View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4255_high_7 (Length: 351)
Name: NF4255_high_7
Description: NF4255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4255_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4082391 - 4082645
Alignment:
| Q |
1 |
agagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtgtgtttaacacttgt---ctcgttcaggtatcgcaaaacatctttgt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4082391 |
agagtgaagaaaagaaaggtcacgtgaatgactgcaacaactgatatcacagtgtgtttaacacttgtgtgctcgttcaggtatcgcaaaacatctttgt |
4082490 |
T |
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| Q |
98 |
caagttgagaacagagtagagcaccaaatgccataacaactctcacacagatagattcaaagatctgaaaacactccctcatctcaacatgagggtcttc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4082491 |
caagttgagaacagagtagagcaccaaatgccataacaactctcacacagatagattcaaagatctgaaaacgctccctcatctcaacatgagggtcttc |
4082590 |
T |
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| Q |
198 |
aagagtctggacaacagccattgaaatttgaaagtttcttccggctccggcttcc |
252 |
Q |
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| T |
4082591 |
aagagtctggacaacagccattgaaatttgaaagtttcttccgactccggcttcc |
4082645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4092100 - 4092354
Alignment:
| Q |
1 |
agagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtgtgtttaacacttgt---ctcgttcaggtatcgcaaaacatctttgt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||| |
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| T |
4092100 |
agagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtttgtttaacacttatgtgctagttcaggtatcgcaaaacatctttgt |
4092199 |
T |
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| Q |
98 |
caagttgagaacagagtagagcaccaaatgccataacaactctcacacagatagattcaaagatctgaaaacactccctcatctcaacatgagggtcttc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
4092200 |
caagttgagaacagagtagagcaccaaatgccataacaactctcacacagatagattcaaagatcttaaaacgctccctcatctcaacatgagggtcttc |
4092299 |
T |
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| Q |
198 |
aagagtctggacaacagccattgaaatttgaaagtttcttccggctccggcttcc |
252 |
Q |
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| T |
4092300 |
aagagtctggacaacatccattgaaatttgaaagtttcttccggctccggcttcc |
4092354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4086540 - 4086605
Alignment:
| Q |
1 |
agagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtgtgtttaacactt |
66 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4086540 |
agagtgaagaaaagaaaggtcacgtgaatgactgcaacaactgatatcacagtgtgtttaacactt |
4086605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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