View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4255_low_10 (Length: 316)
Name: NF4255_low_10
Description: NF4255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4255_low_10 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] scaffold0536 (2 HSPs) |
| | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 48965790 - 48965475
Alignment:
| Q |
1 |
tcttggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48965790 |
tcttggtccagcttctcttattcgtaaaactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaat |
48965691 |
T |
|
| Q |
101 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgg |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48965690 |
tccaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgg |
48965591 |
T |
|
| Q |
201 |
gtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48965590 |
gtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagggattcgaagagagaaa |
48965491 |
T |
|
| Q |
301 |
cattggaaagaagggt |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
48965490 |
cattggaaagaagggt |
48965475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 48958608 - 48958296
Alignment:
| Q |
1 |
tcttggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaat |
100 |
Q |
| |
|
||||||||| |||||||||||||| | || ||||||||||| ||||||||||| | |||| || || || ||||| | ||| ||||||||||||| |
|
|
| T |
48958608 |
tcttggtcctgcttctcttattcgccaaaccattcaagagaaatcagagaggggaaatgagaatgttgttagtgtgcatggttgtctgagttggctcaac |
48958509 |
T |
|
| Q |
101 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgtt-atcaggataaacagctttatgagattgcgtgtgcaatagaagcatcg |
199 |
Q |
| |
|
| |||| ||||||||||||||||||||||| ||||||||||| | ||| || ||| | ||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
48958508 |
ttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatctg-ataaacaactttatgagattgcgtgtgggatagaagcatca |
48958410 |
T |
|
| Q |
200 |
ggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaa |
299 |
Q |
| |
|
||||| || ||| |||||||| |||| || || |||||||| || ||||||||||||||||| ||||||||| || || ||||||||||||||| |
|
|
| T |
48958409 |
ggtcacgaatttgtatgggttgttcctgagaagaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaaggattcgaagagagaa |
48958310 |
T |
|
| Q |
300 |
acattggaaagaag |
313 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48958309 |
acattggaaagaag |
48958296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 48912060 - 48912284
Alignment:
| Q |
1 |
tcttggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||| |||||||||| || ||||| ||| ||||||||| ||||| ||||| ||||||||||||||||| || |
|
|
| T |
48912060 |
tcttggtccagcttctcttattcgcagaactattcaagagaaggctgagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaac |
48912159 |
T |
|
| Q |
101 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgg |
200 |
Q |
| |
|
||||| | | ||||||| ||| |||||||| |||||||||||| |||| || | ||||||||| ||||||||||||||||| | || ||||||||| |
|
|
| T |
48912160 |
tcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcga |
48912259 |
T |
|
| Q |
201 |
gtcatgattttatatgggttattcc |
225 |
Q |
| |
|
|||| || || ||||||||| |||| |
|
|
| T |
48912260 |
gtcacgaattcatatgggttgttcc |
48912284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 48962751 - 48962627
Alignment:
| Q |
5 |
ggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcga |
104 |
Q |
| |
|
||||||| |||||||||||| || | ||||||||||||||||| |||||||| ||||||| ||| |||| ||||||||| || | ||||| ||||| | |
|
|
| T |
48962751 |
ggtccagtttctcttattcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgtctgtggtggcttaattcaa |
48962652 |
T |
|
| Q |
105 |
agcgacataactcagtgttgtacat |
129 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48962651 |
agcgacataactcagtgttgtacat |
48962627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 48961569 - 48961445
Alignment:
| Q |
189 |
tagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagatt |
288 |
Q |
| |
|
|||||||||||||||| || ||| |||||||| |||| || || ||||||| ||||||||| ||||||||||| | |||||||| || || |||| |
|
|
| T |
48961569 |
tagaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggatt |
48961470 |
T |
|
| Q |
289 |
cgaagagagaaacattggaaagaag |
313 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
48961469 |
tgaagagagaaacattgaaaagaag |
48961445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 306
Target Start/End: Complemental strand, 48974537 - 48974265
Alignment:
| Q |
34 |
tcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagc |
133 |
Q |
| |
|
||||||||||||||| ||||||||| |||| |||| |||||| ||||| || |||||||| ||||| |||| || ||||||||| | |||||| | |
|
|
| T |
48974537 |
tcaagagaaagcagataggggacaaacaagtgtagtggacgtgcatgagtgcttaagttggctaaattcaaagcaacccaactcagtgctctacatatgt |
48974438 |
T |
|
| Q |
134 |
tttggaagcctctgtcgttatcagga-taaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaat |
232 |
Q |
| |
|
|| || |||||||| | || ||| | ||| || | ||||||||||| | |||||||||||||||||||| | || ||||||||| | ||| || |
|
|
| T |
48974437 |
ttcgggagcctctgccatt-tcactaataagcaattgtatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgtccccgagaag |
48974339 |
T |
|
| Q |
233 |
aacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaacattgg |
306 |
Q |
| |
|
|| ||||||||||||||||| | || ||||| |||||||| | |||||| |||| |||||||| || ||||| |
|
|
| T |
48974338 |
aaagggaaagaggatgagagcaatgacgagaacgaaaagtggatgccaaagggatttgaagagaggaatattgg |
48974265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 6226 - 6538
Alignment:
| Q |
1 |
tcttggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaat |
100 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| |||||| ||||||||||| | |||| ||||| ||||| |||||| |||||||||| | |
|
|
| T |
6226 |
tcttggtccggcttctcttattcgtagaactgttcaagaaaaagcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctgagttggctagac |
6325 |
T |
|
| Q |
101 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgg |
200 |
Q |
| |
|
||||||| | |||||||||||||||||||| ||||||||||| | || | || | ||||||||| ||||| |||||||| |||| ||||||||||||| |
|
|
| T |
6326 |
tcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgg |
6425 |
T |
|
| Q |
201 |
gtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaa |
300 |
Q |
| |
|
|||| | || ||||||||| |||| || || |||||||| |||||||||||||||||||| ||| ||||| |||||| |||||||||||||||| |
|
|
| T |
6426 |
gtcacaaattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgaagaggagaaaggaaaatggttgccaaagggattcgaagagagaaa |
6525 |
T |
|
| Q |
301 |
cattggaaagaag |
313 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
6526 |
tatcggaaagaag |
6538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 10210 - 10471
Alignment:
| Q |
1 |
tcttggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaat |
100 |
Q |
| |
|
|||| ||||||||| |||| |||||| ||||||||||||||| ||||||| ||| || |||||| ||||| ||||| |||||| |||||||||| || |
|
|
| T |
10210 |
tcttagtccagcttatcttgttcgtagaactgttcaagagaaaacagagagaggagaacagagtgttgtgagtgtgcatgagtgtctgagttggcttaac |
10309 |
T |
|
| Q |
101 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgg |
200 |
Q |
| |
|
| ||||||| ||| |||||||||||||| ||||||||||||| ||| || | |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
10310 |
ttgaagcgagata--tcagtgttgtacatttgctttggaagcctatgttatttttcagataaacaactttatgagattgcgtgcagggtagaagcatcgg |
10407 |
T |
|
| Q |
201 |
gtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaa |
264 |
Q |
| |
|
|| | || ||| |||| ||| |||| || || ||||||||| |||||||| |||||||||| |
|
|
| T |
10408 |
gttacgaatttgtatgagttgttcctgagaagaaagggaaagagaatgagagtcaagaggagaa |
10471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 12589884 - 12590189
Alignment:
| Q |
1 |
tcttggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaat |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| |||||| | ||||||| |||| ||||||||||||| |||||||||| || |
|
|
| T |
12589884 |
tcttggtccagcttctcttattcacaaaactgttcaagagaaagcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaac |
12589983 |
T |
|
| Q |
101 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctg-tcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcg |
199 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||| ||| | || | || ||| |||||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
12589984 |
tcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctca-gataaacaactttatgagatttcgtgtggcatagaagcatca |
12590082 |
T |
|
| Q |
200 |
ggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaa |
299 |
Q |
| |
|
|| || || || |||||||||||||| || || ||||| || ||||||||||| ||||| || ||||| ||||| || | |||| |||||||||| |
|
|
| T |
12590083 |
ggccacgaattcgtatgggttattcccgagaaaaaagggaaggaagatgagagtgatgaggataaacaaaaatggttgcctagtggatttgaagagagaa |
12590182 |
T |
|
| Q |
300 |
acattgg |
306 |
Q |
| |
|
||||||| |
|
|
| T |
12590183 |
acattgg |
12590189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 304
Target Start/End: Original strand, 12483207 - 12483482
Alignment:
| Q |
29 |
actgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtaca |
128 |
Q |
| |
|
||||||||||| || |||||||||||| | ||||||| ||||||||||| |||||| |||||||| || || |||| | | || ||||||||||||| |
|
|
| T |
12483207 |
actgttcaagaaaaggcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtaca |
12483306 |
T |
|
| Q |
129 |
taagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattcccct |
228 |
Q |
| |
|
|| ||||||| ||||| || || |||||||||||||| || ||| | || | |||||||||||||||| | | || ||||||||| |||| |
|
|
| T |
12483307 |
tatgctttgggagcctatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctga |
12483406 |
T |
|
| Q |
229 |
taataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaacatt |
304 |
Q |
| |
|
|| || ||||| || |||||||| || |||||||| |||||||||| || ||| |||| || |||||||||||| |
|
|
| T |
12483407 |
gaaaaaagggaaggaagatgagagcgatgaggagaaagaaaagtggttgccgaagggatttgaggagagaaacatt |
12483482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 13448824 - 13448509
Alignment:
| Q |
1 |
tcttggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaat |
100 |
Q |
| |
|
|||||||||| ||||||||||||| || |||| |||||||||| ||||||||||| | ||| |||| |||| ||||| ||| | ||||||||||| || |
|
|
| T |
13448824 |
tcttggtccaacttctcttattcgcaaaactgctcaagagaaatcagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgat |
13448725 |
T |
|
| Q |
101 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgg |
200 |
Q |
| |
|
|| || || ||||||||||||||||||| | ||||||||| || || | |||||||| || || ||||| || ||||| ||||||||||| | |
|
|
| T |
13448724 |
tcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccg |
13448625 |
T |
|
| Q |
201 |
gtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaa |
300 |
Q |
| |
|
|||| || ||||||||| |||| || || |||||||| |||||||| ||||| ||||| ||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
13448624 |
gtcacccattcatatgggttgttcctgagaagaaagggaaagaagatgagagcgaagaagagaaagaaaagtggttaccgaagggatttgaagagagaaa |
13448525 |
T |
|
| Q |
301 |
cattggaaagaagggt |
316 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
13448524 |
tatcgggaagaagggt |
13448509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 304
Target Start/End: Complemental strand, 13440657 - 13440358
Alignment:
| Q |
5 |
ggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcga |
104 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||||||||||||||||| | ||| ||| |||| | |||| || || ||||||||||| | || |
|
|
| T |
13440657 |
ggtccaacttctcttattcgtaaaaccattcaagagaaagcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcag |
13440558 |
T |
|
| Q |
105 |
agcgacataactcagtgttgtacataagctttggaagcctctg-tcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtc |
203 |
Q |
| |
|
|| | |||||| |||||||||||| | ||||||||| || | || || | ||||||| || |||||||| ||||| |||||||||||||| ||| |
|
|
| T |
13440557 |
agaaagttaactcggtgttgtacatatgttttggaagcatcaactatttctctg-ataaacaactatatgagatggcgtgcgcaatagaagcatctagtc |
13440459 |
T |
|
| Q |
204 |
atgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaacat |
303 |
Q |
| |
|
| || ||||||||| |||| || || |||||||| ||||||||||| || ||||| |||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
13440458 |
acccattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgaggaagagaaagaaaagtggttgccaaagggattcgaagagagaaacat |
13440359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 13455060 - 13454993
Alignment:
| Q |
236 |
gggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaacat |
303 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||| || ||| |||| ||||||| |||||| |
|
|
| T |
13455060 |
gggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagagaaaaacat |
13454993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 28385795 - 28385480
Alignment:
| Q |
1 |
tcttggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaat |
100 |
Q |
| |
|
|||||||||| |||| |||||||||| |||||||||||||||||||||| |||| | |||||| ||||||| ||| ||||| ||| |||||||| |
|
|
| T |
28385795 |
tcttggtccaacttcctttattcgtaaaactgttcaagagaaagcagagaagggaaacaagagtgatgtgagcgagcacgagtgcctgaactggctcaaa |
28385696 |
T |
|
| Q |
101 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgg |
200 |
Q |
| |
|
|| ||||| ||||||||| |||||||| | ||||||||| | | || |||||||| || ||||||||||| || ||| |||||||||| | |
|
|
| T |
28385695 |
tcacagcgagttaactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcag |
28385596 |
T |
|
| Q |
201 |
gtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaa |
300 |
Q |
| |
|
|||| || ||||||||| |||| || || |||||||| ||||||| ||||| ||||| |||||||| | |||||| |||| || |||||||| |
|
|
| T |
28385595 |
gtcacccattcatatgggttgttcctgagaagaaagggaaagaagatgagatcgaagaagagaaagaaaagtggctgccaaagggatttgaggagagaaa |
28385496 |
T |
|
| Q |
301 |
cattggaaagaagggt |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28385495 |
cattggaaagaagggt |
28385480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 12540911 - 12540831
Alignment:
| Q |
236 |
gggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggt |
316 |
Q |
| |
|
|||||||| ||||||| |||||| ||||| |||||||| | || ||| |||| || ||||||||||||||||| |||||| |
|
|
| T |
12540911 |
gggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaaacattggaaaaaagggt |
12540831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 316
Target Start/End: Original strand, 3417402 - 3417560
Alignment:
| Q |
158 |
gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag |
257 |
Q |
| |
|
|||||||| || ||||||||||| | |||||||||||||||||||| || ||||||||| ||| || || || ||||| ||||||| |||| |
|
|
| T |
3417402 |
gataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttcttgagaagaaaggaaaagaagatgagaacgaag |
3417501 |
T |
|
| Q |
258 |
aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggt |
316 |
Q |
| |
|
| ||||| |||||||||| || ||| |||| || |||||||||||||||||||||||| |
|
|
| T |
3417502 |
aagagaaagaaaagtggttgccgaagggatttgaggagagaaacattggaaagaagggt |
3417560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 12641196 - 12641495
Alignment:
| Q |
1 |
tcttggtccagcttctcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaat |
100 |
Q |
| |
|
|||||||||| ||| ||||||||| || ||| || |||||||| | |||||| | ||||||| || |||| ||| ||||| | ||||||||||| |
|
|
| T |
12641196 |
tcttggtccaacttgtcttattcgcaaaacttttgaagagaaatctatgaggggcaatgagagtgtggttagcgcgcataagtgtctaggttggctcaat |
12641295 |
T |
|
| Q |
101 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgg |
200 |
Q |
| |
|
|| |||| | |||| |||||||| |||||| | ||||| ||| ||| | || |||||||| ||||| ||||||||| | | ||||||| || | |
|
|
| T |
12641296 |
tcaaagcaagataattcagtgttatacatatgttttgggagcatctcttatttctctgataaacaactttacgagattgcgagcggaatagaaaattcag |
12641395 |
T |
|
| Q |
201 |
gtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaa |
300 |
Q |
| |
|
|||| || ||| |||||||| |||| || || |||||| | |||||||||||||||||||| |||||||||| || || |||||||||||||||| |
|
|
| T |
12641396 |
gtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatgagagtgaagaggagaaagaaaagtggttgcctaaaggattcgaagagagaaa |
12641495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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