View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4255_low_11 (Length: 306)
Name: NF4255_low_11
Description: NF4255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4255_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 31338654 - 31338941
Alignment:
| Q |
1 |
accaccaatccgttctccatcattccctctaataatacaataataccaccacaaccagctttatttccacccttgcacgcaccatctgtatttaacttca |
100 |
Q |
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| T |
31338654 |
accaccaatccattctccatcattccctctaataatacaataataccaccacaaccagctttatttccacccttgcacgcaccatctgtatttaacttca |
31338753 |
T |
|
| Q |
101 |
cccaattaacttgtggatgcagatttagagaacaagaatatggcggatatccacgagagcttttaaaacaaacacaaaaagtccaaggtaaaggagaacc |
200 |
Q |
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| T |
31338754 |
cccaattaacttgtggatgcagatttagagaacaagaatatggcggatatccacgagagcttttaaaacaaacacaaaaagtccaaggtaaaggagaacc |
31338853 |
T |
|
| Q |
201 |
actgggattttacatttcataatacacataattctcaatcaagactttgaaaatcgataataatgaagcttgtcttgatgcctaatat |
288 |
Q |
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| T |
31338854 |
actgggattttacatttcataatacacataattctcaatcaagactttgaaaatcgataataatgaagcttgtcttgatgcctaatat |
31338941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 31306605 - 31306714
Alignment:
| Q |
121 |
agatttagagaacaagaatatggcggatatccacgagagcttttaaaacaaacacaaaaagtcc-aaggtaaaggagaaccactgggattttacatttca |
219 |
Q |
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| T |
31306605 |
agatttagagaacaagaatatggtggatatccacaagagttttgaaaagaaa---aaaaattccgaaggtaaaggagaaccactgggattttactcttca |
31306701 |
T |
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| Q |
220 |
taatacacataat |
232 |
Q |
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| T |
31306702 |
tgatacacataat |
31306714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 42652704 - 42652741
Alignment:
| Q |
54 |
accagctttatttccacccttgcacgcaccatctgtat |
91 |
Q |
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| T |
42652704 |
accagctatatttccacccttgcacgcaccatctgtat |
42652741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 50564755 - 50564654
Alignment:
| Q |
1 |
accaccaatccgttctccatcattccctctaataatacaataataccaccacaaccagctttatttccacccttgcacgcaccatctgtatttaacttca |
100 |
Q |
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||||||||||| |||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
50564755 |
accaccaatccattctccatcactccctctaataatac--------caccacaactagctatatttccacccttgcacgcaccatccctatttaacttca |
50564664 |
T |
|
| Q |
101 |
cccaattaac |
110 |
Q |
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|||||||||| |
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|
| T |
50564663 |
cccaattaac |
50564654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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