View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4255_low_12 (Length: 297)
Name: NF4255_low_12
Description: NF4255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4255_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 2005589 - 2005876
Alignment:
| Q |
1 |
tctattctggtccttcacaattttgtgcgggccaatttagtctataacaaaaataaaaccccaaggagtcactgacattatcatatggacaaattagtcc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
2005589 |
tctattttggtccttcacaattttgtgcggaccaatttagtctataacaaaaataaaacgccaag-agtcactgacattgtcatatggacaaattagtcc |
2005687 |
T |
|
| Q |
101 |
ttctgttatactgaatcaggactaatttgtccccggtataaaaatgtcacactactttgggttttattgttgcacggactaaatcggcccacacgaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
2005688 |
ttctgttatactgaatcaggactaatttgtccccggtataaaaatgtcacactactttgggttttattgttgcagggactaaatcggcccacatgaaaat |
2005787 |
T |
|
| Q |
201 |
tgtgaagaccaaattggttttcactcttaatatagattaaaaaataattacacatgtagtttatctaaaatcaatcttgcattcatctc |
289 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
2005788 |
tgtgaagaccaaatcggttttcactcttaatatagattaaaaaataattacacatgtagtttatgtaaaatcaatcttgcgttcatctc |
2005876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 33328811 - 33328855
Alignment:
| Q |
104 |
tgttatactgaatcag-gactaatttgtccccggtataaaaatgt |
147 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
33328811 |
tgttatactgaattagagactaatttatccccggtataaaaatgt |
33328855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University