View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4255_low_18 (Length: 234)

Name: NF4255_low_18
Description: NF4255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4255_low_18
NF4255_low_18
[»] chr7 (5 HSPs)
chr7 (2-105)||(1110689-1110791)
chr7 (148-196)||(48135561-48135610)
chr7 (106-142)||(1111030-1111066)
chr7 (148-195)||(5639553-5639601)
chr7 (148-195)||(11909260-11909308)
[»] chr2 (7 HSPs)
chr2 (147-186)||(31619766-31619805)
chr2 (148-195)||(42230618-42230666)
chr2 (147-186)||(33052137-33052176)
chr2 (148-194)||(6973639-6973685)
chr2 (148-186)||(38262091-38262129)
chr2 (149-186)||(44949448-44949485)
chr2 (148-195)||(4184721-4184769)
[»] chr8 (3 HSPs)
chr8 (139-195)||(26492405-26492462)
chr8 (148-186)||(1647036-1647074)
chr8 (148-195)||(33934075-33934123)
[»] chr5 (10 HSPs)
chr5 (145-186)||(34102068-34102109)
chr5 (148-187)||(4417866-4417905)
chr5 (148-186)||(4162909-4162947)
chr5 (147-196)||(9087601-9087651)
chr5 (148-186)||(34820621-34820659)
chr5 (148-195)||(7164839-7164887)
chr5 (148-195)||(13359157-13359205)
chr5 (148-195)||(13461646-13461694)
chr5 (146-186)||(38860906-38860946)
chr5 (148-195)||(43585591-43585639)
[»] chr1 (7 HSPs)
chr1 (140-179)||(47882004-47882043)
chr1 (145-195)||(47912668-47912719)
chr1 (148-186)||(9947750-9947788)
chr1 (146-195)||(47418223-47418273)
chr1 (144-176)||(38190964-38190996)
chr1 (148-195)||(38824287-38824335)
chr1 (146-186)||(45748991-45749030)
[»] chr6 (1 HSPs)
chr6 (148-186)||(25363733-25363771)
[»] chr4 (5 HSPs)
chr4 (148-186)||(11347115-11347153)
chr4 (147-195)||(48088091-48088140)
chr4 (148-195)||(9968426-9968474)
chr4 (148-195)||(34321378-34321426)
chr4 (148-195)||(34709671-34709719)
[»] chr3 (1 HSPs)
chr3 (148-195)||(17940184-17940232)


Alignment Details
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 1110689 - 1110791
Alignment:
Q  2 aaaacccaccatataaacacgccaattcgtcatcatggcaaacatccctttacaaattgcctatgacggtttgttaaaaaacccaacacgccattccaac 101  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||  ||| | || |||||||  | ||||||||||||||    
T  1110689 aaaacccaccatataaacacggcaatgcatcatcatggcaaacatcccttttcaaattgcctattgcgg-tcgtcaaaaaacataccacgccattccaac 1110787  T
Q  102 atgg 105  Q
    ||||    
T  1110788 atgg 1110791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 48135610 - 48135561
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcattt 196  Q
    |||||| || |||||||||||||||||||||| | |||||||||||||||    
T  48135610 tactccctctgttttttaatataagcaaaattgattttttatgttcattt 48135561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 1111030 - 1111066
Alignment:
Q  106 cagcaccatggctgccatttgacaacacaggttcaaa 142  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  1111030 cagcgccatggctgccatttgataacacaggttcaaa 1111066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 5639553 - 5639601
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    ||||||||| |||| ||||||||||||||||| | ||||||||||||||    
T  5639553 tactccttctgtttattaatataagcaaaattgattttttatgttcatt 5639601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 11909260 - 11909308
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    |||||| ||||||||||||||||||||||||| | |||||| |||||||    
T  11909260 tactccctccgttttttaatataagcaaaattgactttttaagttcatt 11909308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 31619766 - 31619805
Alignment:
Q  147 gtactccttccgttttttaatataagcaaaatttattttt 186  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  31619766 gtactccttccgttttttaatataagcaaaattgattttt 31619805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 42230666 - 42230618
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    |||||| ||||||||||||||||||||||||| | ||||||||||||||    
T  42230666 tactccctccgttttttaatataagcaaaattgactttttatgttcatt 42230618  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 33052137 - 33052176
Alignment:
Q  147 gtactccttccgttttttaatataagcaaaatttattttt 186  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  33052137 gtactccctccgttttttaatataagcaaaattgattttt 33052176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 6973639 - 6973685
Alignment:
Q  148 tactccttccgttttttaatataagcaaaatttatttttatgttcat 194  Q
    |||||||||||||||| |||||||  |||||| ||||||||||||||    
T  6973639 tactccttccgtttttaaatataaataaaattgatttttatgttcat 6973685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 38262129 - 38262091
Alignment:
Q  148 tactccttccgttttttaatataagcaaaatttattttt 186  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  38262129 tactccttccgtttttaaatataagcaaattttattttt 38262091  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 44949485 - 44949448
Alignment:
Q  149 actccttccgttttttaatataagcaaaatttattttt 186  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  44949485 actccctccgtttttaaatataagcaaaatttattttt 44949448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 4184721 - 4184769
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    |||||| ||||| ||||||||||||||||||| | ||||||||||||||    
T  4184721 tactccctccgtattttaatataagcaaaattgactttttatgttcatt 4184769  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 26492462 - 26492405
Alignment:
Q  139 caaaattagtactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| |||||| |||||||    
T  26492462 caaaattagtactccctccgtttttaaatataaacaaaatttactttttaggttcatt 26492405  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 1647036 - 1647074
Alignment:
Q  148 tactccttccgttttttaatataagcaaaatttattttt 186  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  1647036 tactccctccgtattttaatataagcaaaatttattttt 1647074  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 33934075 - 33934123
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattt-atttttatgttcatt 195  Q
    |||||| |||||||||||||||||||||| ||| ||||||| |||||||    
T  33934075 tactccctccgttttttaatataagcaaattttgatttttaggttcatt 33934123  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 34102068 - 34102109
Alignment:
Q  145 tagtactccttccgttttttaatataagcaaaatttattttt 186  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  34102068 tagtactccctccgtttttaaatataagcaaaatttattttt 34102109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 4417905 - 4417866
Alignment:
Q  148 tactccttccgttttttaatataagcaaaatttattttta 187  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  4417905 tactccttccgtttttaaatataagcaaaaattattttta 4417866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 4162947 - 4162909
Alignment:
Q  148 tactccttccgttttttaatataagcaaaatttattttt 186  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  4162947 tactccttccgttttaaaatataagcaaaatttattttt 4162909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 9087651 - 9087601
Alignment:
Q  147 gtactccttccgttttttaatataagcaaaattta-tttttatgttcattt 196  Q
    ||||||||||||||||| ||||||||||||||| | |||||| ||||||||    
T  9087651 gtactccttccgtttttaaatataagcaaaattgactttttaggttcattt 9087601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 34820621 - 34820659
Alignment:
Q  148 tactccttccgttttttaatataagcaaaatttattttt 186  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  34820621 tactccttccgtattttaatataagcaaaattaattttt 34820659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 7164839 - 7164887
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattt-atttttatgttcatt 195  Q
    |||||| |||||||||||||||||||||| ||| ||||||| |||||||    
T  7164839 tactccctccgttttttaatataagcaaattttgatttttaggttcatt 7164887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 13359157 - 13359205
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    |||||| ||||||||||||||||||||||||| | |||||| |||||||    
T  13359157 tactccctccgttttttaatataagcaaaattgactttttaggttcatt 13359205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 13461694 - 13461646
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    |||||| ||||||||||||||||||||||||| | |||||| |||||||    
T  13461694 tactccctccgttttttaatataagcaaaattgactttttaggttcatt 13461646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 38860946 - 38860906
Alignment:
Q  146 agtactccttccgttttttaatataagcaaaatttattttt 186  Q
    |||||||| ||||||||| ||||||||||||||| ||||||    
T  38860946 agtactccctccgtttttaaatataagcaaaattgattttt 38860906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 43585639 - 43585591
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    |||||| ||||||||| ||||||||||||||||| |||||| |||||||    
T  43585639 tactccatccgtttttaaatataagcaaaatttactttttaggttcatt 43585591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 47882043 - 47882004
Alignment:
Q  140 aaaattagtactccttccgttttttaatataagcaaaatt 179  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  47882043 aaaattattactccttctgttttttaatataagcaaaatt 47882004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 47912719 - 47912668
Alignment:
Q  145 tagtactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    ||||||||||||||||||  ||||||||||||||||| |||||| |||||||    
T  47912719 tagtactccttccgttttaaaatataagcaaaatttactttttaggttcatt 47912668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 9947750 - 9947788
Alignment:
Q  148 tactccttccgttttttaatataagcaaaatttattttt 186  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  9947750 tactccctccgttttttaatataagcaaaattgattttt 9947788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 47418273 - 47418223
Alignment:
Q  146 agtactccttccgttttttaatataagcaaaatt-tatttttatgttcatt 195  Q
    |||||||| ||||||||||||||||||||||||| | |||||| |||||||    
T  47418273 agtactccctccgttttttaatataagcaaaattgtttttttaggttcatt 47418223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 38190996 - 38190964
Alignment:
Q  144 ttagtactccttccgttttttaatataagcaaa 176  Q
    |||||||||| ||||||||||||||||||||||    
T  38190996 ttagtactccatccgttttttaatataagcaaa 38190964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 38824287 - 38824335
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    |||||| ||||||||| |||||||||||| |||| ||||||||||||||    
T  38824287 tactccatccgtttttaaatataagcaaattttattttttatgttcatt 38824335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 45748991 - 45749030
Alignment:
Q  146 agtactccttccgttttttaatataagcaaaatttattttt 186  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  45748991 agtactcct-ccgttttttaatataagcaaaattgattttt 45749030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 25363733 - 25363771
Alignment:
Q  148 tactccttccgttttttaatataagcaaaatttattttt 186  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  25363733 tactccttccgtttttaaatataagcaaaattgattttt 25363771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 11347115 - 11347153
Alignment:
Q  148 tactccttccgttttttaatataagcaaaatttattttt 186  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  11347115 tactccatccgtttttaaatataagcaaaatttattttt 11347153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 48088140 - 48088091
Alignment:
Q  147 gtactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    ||||||| ||||||||| ||||||||||||||| | ||||||||||||||    
T  48088140 gtactccctccgtttttaaatataagcaaaattgactttttatgttcatt 48088091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 9968474 - 9968426
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    |||||| ||||||||| |||||||||||| |||| ||||||||||||||    
T  9968474 tactccctccgtttttaaatataagcaaattttattttttatgttcatt 9968426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 34321378 - 34321426
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    |||||||| ||||||| ||||||||||||||||| |||||| |||||||    
T  34321378 tactcctttcgtttttaaatataagcaaaatttactttttaggttcatt 34321426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 34709719 - 34709671
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
    |||||| ||||||||||||||||||||||||| | |||||| |||||||    
T  34709719 tactccctccgttttttaatataagcaaaattgactttttaggttcatt 34709671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 17940184 - 17940232
Alignment:
Q  148 tactccttccgttttttaatataagcaaaattta-tttttatgttcatt 195  Q
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T  17940184 tactccctccgtttttaaatataagcaaaatttactttttaggttcatt 17940232  T

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