View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4255_low_7 (Length: 357)
Name: NF4255_low_7
Description: NF4255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4255_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 11119355 - 11119686
Alignment:
| Q |
8 |
catcatcaacaacaataacaccatcaacatcatcttcattagcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacct |
107 |
Q |
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| T |
11119355 |
catcaacaacaataataacaccatcaacatcatcttcattctcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacct |
11119454 |
T |
|
| Q |
108 |
atcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttaattgaatcaccatcatcactactaacatctccatcatcactgtct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11119455 |
atcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcgttgtct |
11119554 |
T |
|
| Q |
208 |
gcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || |
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| T |
11119555 |
gcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccatttcctaaattcacct |
11119654 |
T |
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| Q |
308 |
taggttcaatatacaattcaacatcgcacttc |
339 |
Q |
| |
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||||||||| ||||||||||||||| |||||| |
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| T |
11119655 |
taggttcaacatacaattcaacatcacacttc |
11119686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 114 - 316
Target Start/End: Original strand, 12205970 - 12206172
Alignment:
| Q |
114 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttaattgaatcaccatcatcactactaacatctccatcatcactgtctgcttca |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
|
| Q |
214 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagcttaggtt |
313 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttaggtt |
12206169 |
T |
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| Q |
314 |
caa |
316 |
Q |
| |
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||| |
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| T |
12206170 |
caa |
12206172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 35 - 338
Target Start/End: Original strand, 32741098 - 32741389
Alignment:
| Q |
35 |
catcatcttcattagcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacctatcatcaaccccagccatcctctcttc |
134 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||| |
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| T |
32741098 |
catcatcttcattagcattgttagggtcaagttggggttctgaaatgacattat------------caaacccatcatcaaccgcagccatcttctcttc |
32741185 |
T |
|
| Q |
135 |
ttcactgtcattaaagtgtgtgcctttaattgaatcaccatcatcactactaacatctccatcatcactgtctgcttcaccaacattgccttcaacttca |
234 |
Q |
| |
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|||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||| |||| |
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| T |
32741186 |
ttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatctccaccatcgatgtctacttcaccaacatcgccttcaatttca |
32741285 |
T |
|
| Q |
235 |
tccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagcttaggttcaatatacaattcaacatcgc |
334 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
32741286 |
tccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcatttcctaaattcaccttaggttcaacatacaattcaacatcgc |
32741385 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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