View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4255_low_9 (Length: 344)
Name: NF4255_low_9
Description: NF4255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4255_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 2408585 - 2408266
Alignment:
| Q |
13 |
agaagaaaaagatacatggacaaaatcaaagaaaacgctaactcacatagacgaacaccatatttaagccaattacttaatattattctatttttgattg |
112 |
Q |
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| T |
2408585 |
agaagaaaaagatacatggacaaaatcaaagaaaacgctaactcacatagacgaccaccatatttaagccaattacttaatattattctatttttgattg |
2408486 |
T |
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| Q |
113 |
gaaatttgtttattattcataactaacataatctattacnnnnnnn--aagggaaagtaatctattacttatttctatcaaaataagtaaataatattta |
210 |
Q |
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| T |
2408485 |
gaaatttgtttattattcataactaacataatctattacttttttgttaagggaaagtaatctattacttatttctatcaaaataagtaaataatattta |
2408386 |
T |
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| Q |
211 |
t---agtctaggaacaaatgaaaacaaatttttaacctaattaaaggttataagtttgaattcaactcttaaaatacatcgtggttaaatctattagttg |
307 |
Q |
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| T |
2408385 |
ttatagtctaggaacaaatgaaaacaaatttttaacctaattaaaggttataaatttgaattcaactcttaaaatacatcgtggttaaatctattagttg |
2408286 |
T |
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| Q |
308 |
aaagtttgcttgaggatagt |
327 |
Q |
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|||||||||| ||||||||| |
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| T |
2408285 |
aaagtttgctagaggatagt |
2408266 |
T |
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