View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256-Insertion-11 (Length: 122)
Name: NF4256-Insertion-11
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 41219200 - 41219321
Alignment:
| Q |
1 |
gaattcgcaaaactccgtttccatcgagaattaaatggagttttcccgtatttcgacaggagaatctaacagaatccaaacctaaataatgtgctaaatg |
100 |
Q |
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| T |
41219200 |
gaattcgcaaaactccgtttccatcgagaattaaatggagttttcccgtatttcgacaggagaatctaacagaatccaaacctaaataacgtgctaaatg |
41219299 |
T |
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| Q |
101 |
tagaaatgaagcatatatcaag |
122 |
Q |
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| T |
41219300 |
tagaaatgaagcatatatcaag |
41219321 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 39409177 - 39409229
Alignment:
| Q |
19 |
ttccatcgagaattaaatggagttttcccgtatttcgacaggagaatctaaca |
71 |
Q |
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| T |
39409177 |
ttccatcgagaattgaatggagtttccccgtatttcgactagagaatctaaca |
39409229 |
T |
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