View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256-Insertion-2 (Length: 150)
Name: NF4256-Insertion-2
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256-Insertion-2 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 29008315 - 29008170
Alignment:
| Q |
5 |
agtagctctacaaacagcactattaactgcatgtttgtttggtgtcgccgtggctttgtcggaatcacaatgagttagcctgattttgcaaatgctacaa |
104 |
Q |
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| T |
29008315 |
agtagctctacaaacagcactattaactgcatgtttgtttggtgtcgccgtggctttgtcgaaatcacaatgagttagcctgattttgcaaatgctacaa |
29008216 |
T |
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| Q |
105 |
agtgatttcgagaaactcatcttgatacaaacatacagtaggttag |
150 |
Q |
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| T |
29008215 |
agtgatttcgacaaactcatcttgatacaaacatacagtaggttag |
29008170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 21408893 - 21409019
Alignment:
| Q |
10 |
ctctacaaacagcactattaactgcatgtttgtttggtgtcgccgtggctttgtcggaatcacaatgagttagcctgattttgcaaatgctacaaagtga |
109 |
Q |
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| T |
21408893 |
ctctacaaacaacactattaactgcatgtttgtttggtgt----gtggctttgtcgaaatcacaacgagttaacatgattt-gcaaatgctacaaagtga |
21408987 |
T |
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| Q |
110 |
tttcgagaaactcatcttgatacaaacataca |
141 |
Q |
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| T |
21408988 |
tttcaacaaattcatcttgatacaaacataca |
21409019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 21461209 - 21461345
Alignment:
| Q |
10 |
ctctacaaacagcactattaactgcatgtttgtttggtgtcgccgtggctttgtcggaatcacaatgagttagcctgattttgcaaatgctacaaagtga |
109 |
Q |
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| T |
21461209 |
ctctacaaacaacaatattaactgcatgtttgtttggtgtcg---tggctttgtcgaaatcacaacgagttaacatgattt-gcaaatgctacaaagtga |
21461304 |
T |
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| Q |
110 |
tttcgagaaactcatcttgatacaaacatacagtaggttag |
150 |
Q |
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| T |
21461305 |
ttttaacaaattcatcttgatacaaacatacactaggttag |
21461345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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