View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256-Insertion-5 (Length: 191)
Name: NF4256-Insertion-5
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 44001263 - 44001448
Alignment:
| Q |
6 |
atgtatcctagtaatttacaaagaaacaaagtatatagaaattgtaagcaggtatgtatgaatgaatggaatatgatgatgacaatttatgaaacaaaac |
105 |
Q |
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| T |
44001263 |
atgtatcctagtaatttacaaagaaacagagtatatagaaattgtaagcaggtatgtatgtatgaatggaatatgatgctgacaatttatgaaacaaaac |
44001362 |
T |
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| Q |
106 |
aaagtaacttgtgaacaaagggtataacacacaattccaaatccaaataacaaaataaacgacataaagaacgaagaaaaagaaga |
191 |
Q |
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| T |
44001363 |
aacgtaacttgtgaacaaagggtataacacacaattccaaatccaaataacaaaataaacgacataaagaacgaagaaaaagaaga |
44001448 |
T |
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Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 16755154 - 16755282
Alignment:
| Q |
33 |
aaagtatatagaaattgtaagcaggtatgtatgaatgaatggaatatgatgatgacaatttatgaaacaaaacaaagtaacttgtgaacaaagggtata- |
131 |
Q |
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| T |
16755154 |
aaagtatatagaaattgcaagcatgtatgtatgtatgaatg-aatatgatgatgacaatttgtgaaacaaaacatagtaacttgtgaacaaagggtataa |
16755252 |
T |
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| Q |
132 |
-acacacaattccaaatccaaataacaaaa |
160 |
Q |
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| T |
16755253 |
cacacacaattccaaatccaaataacaaaa |
16755282 |
T |
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Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 10005667 - 10005789
Alignment:
| Q |
74 |
gaatatgatgatgacaatttatgaaacaaaacaaagtaacttgtgaacaaagggtataacacac--aattccaaatccaaataacaaaataaac---gac |
168 |
Q |
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| T |
10005667 |
gaatatgatgataacaacttgtgaaacaaaatagagtaacttgtgtataaagtgtataacacacaaaattccaaatccaaataacaaaacaaacagagag |
10005766 |
T |
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| Q |
169 |
ataaagaacgaagaaaaagaaga |
191 |
Q |
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| T |
10005767 |
ataaagaacaaagaaaaagaaga |
10005789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 30775240 - 30775168
Alignment:
| Q |
18 |
aatttacaaagaaacaaagtatatagaaattgtaagcaggtatgtatgaatgaatg---gaatatgatgatga |
87 |
Q |
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| T |
30775240 |
aatttacgaagaaacatagtatatagaaattttaagcaggtatgtatgaatgaatgaatgaatatgatgatga |
30775168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 30775114 - 30775064
Alignment:
| Q |
108 |
agtaacttgtgaacaaagggtataacacaca--attccaaatccaaataac |
156 |
Q |
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| T |
30775114 |
agtaacctgtgaagaaagggtataacacacacaattccaaatccaaataac |
30775064 |
T |
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