View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4256-Insertion-6 (Length: 154)

Name: NF4256-Insertion-6
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4256-Insertion-6
NF4256-Insertion-6
[»] chr1 (14 HSPs)
chr1 (4-154)||(2011831-2011981)
chr1 (15-154)||(2010421-2010560)
chr1 (15-85)||(2019703-2019773)
chr1 (14-85)||(2006401-2006472)
chr1 (24-62)||(3361682-3361720)
chr1 (109-154)||(2006323-2006368)
chr1 (16-93)||(6601779-6601856)
chr1 (25-62)||(2948497-2948534)
chr1 (25-62)||(3340472-3340509)
chr1 (21-62)||(4323139-4323180)
chr1 (27-88)||(9818941-9819002)
chr1 (25-72)||(3349336-3349383)
chr1 (34-93)||(3378667-3378726)
chr1 (14-93)||(6592525-6592604)
[»] chr2 (3 HSPs)
chr2 (15-65)||(20923438-20923488)
chr2 (15-62)||(20927040-20927087)
chr2 (21-62)||(20952962-20953003)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 3e-80; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 2011981 - 2011831
Alignment:
Q  4 agaccaaaaggagagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctcttgatagctgcagggt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2011981 agaccaaaaggagagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctcttgatagctgcagggt 2011882  T
Q  104 gttcagatgttgcagacacacattgtgaatcaaacacaagatttggtattg 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2011881 gttcagatgttgcagacacacattgtgaatcaaacacaagatttggtattg 2011831  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 2010560 - 2010421
Alignment:
Q  15 agagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctcttgatagctgcagggtgttcagatgtt 114  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||||||||| |||| ||  |||| | |  ||||||    
T  2010560 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataattgccaaaagctttctctcgataactaaagggcgatgggatgtt 2010461  T
Q  115 gcagacacacattgtgaatcaaacacaagatttggtattg 154  Q
    ||||| |||||||||  |||||||||||||||||||||||    
T  2010460 gcagagacacattgtttatcaaacacaagatttggtattg 2010421  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 2019773 - 2019703
Alignment:
Q  15 agagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttc 85  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||||||    
T  2019773 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataattgccaaaagctttc 2019703  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 2006472 - 2006401
Alignment:
Q  14 gagagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttc 85  Q
    |||||| || ||||||||||||||||||| |||||||||||||||| || || |||||| ||| ||||||||    
T  2006472 gagagatctggaacttgttgattggcccagaataaagtaaaagtacctgatcaataatttccataagctttc 2006401  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 3361720 - 3361682
Alignment:
Q  24 gaacttgttgattggcccataataaagtaaaagtacatg 62  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  3361720 gaacttgttgattggcccataatgaagtaaaagtacatg 3361682  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 2006368 - 2006323
Alignment:
Q  109 gatgttgcagacacacattgtgaatcaaacacaagatttggtattg 154  Q
    ||||||||||| |||||||||  |||||||||||||||||||||||    
T  2006368 gatgttgcagagacacattgtttatcaaacacaagatttggtattg 2006323  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 6601779 - 6601856
Alignment:
Q  16 gagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctcttgata 93  Q
    |||||||||||||| |||||||||||| |||  |||||||||||||| || ||||||  | |||| || |||||||||    
T  6601779 gagagcttgaactttttgattggcccagaatggagtaaaagtacatgatcaataattctcgaaagtttgctcttgata 6601856  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 2948497 - 2948534
Alignment:
Q  25 aacttgttgattggcccataataaagtaaaagtacatg 62  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  2948497 aacttgttgattggcccagaatgaagtaaaagtacatg 2948534  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 3340509 - 3340472
Alignment:
Q  25 aacttgttgattggcccataataaagtaaaagtacatg 62  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  3340509 aacttgttgattggcccagaatgaagtaaaagtacatg 3340472  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 4323139 - 4323180
Alignment:
Q  21 cttgaacttgttgattggcccataataaagtaaaagtacatg 62  Q
    ||||||| |||||||||||||| ||| |||||||||||||||    
T  4323139 cttgaacatgttgattggcccagaatgaagtaaaagtacatg 4323180  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 9818941 - 9819002
Alignment:
Q  27 cttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctct 88  Q
    |||||||||||||||  ||| ||||||||||||||| || ||||||  ||||| ||||||||    
T  9818941 cttgttgattggcccggaatgaagtaaaagtacatgatcaataattctcaaaaactttctct 9819002  T

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Target: chr1; HSP #12
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 3349383 - 3349336
Alignment:
Q  25 aacttgttgattggcccataataaagtaaaagtacatggtcgataatt 72  Q
    |||||||||||| ||||| ||| ||||||||||||||| || ||||||    
T  3349383 aacttgttgattagcccagaatgaagtaaaagtacatgatcaataatt 3349336  T

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Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 3378726 - 3378667
Alignment:
Q  34 attggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctcttgata 93  Q
    ||||||||| ||| ||||||||||||||| |||||||||  ||||| ||| |||| ||||    
T  3378726 attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttgctctcgata 3378667  T

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Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 6592525 - 6592604
Alignment:
Q  14 gagagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctcttgata 93  Q
    |||||||||||||||| |||||||| ||| ||   |||||||||||||| || ||||||    ||||||| |||||||||    
T  6592525 gagagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgata 6592604  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 20923488 - 20923438
Alignment:
Q  15 agagagcttgaacttgttgattggcccataataaagtaaaagtacatggtc 65  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  20923488 agagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtc 20923438  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 20927087 - 20927040
Alignment:
Q  15 agagagcttgaacttgttgattggcccataataaagtaaaagtacatg 62  Q
    ||||| ||||||| |||||||||||||||||| ||||||||| |||||    
T  20927087 agagaacttgaacatgttgattggcccataatgaagtaaaaggacatg 20927040  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 20953003 - 20952962
Alignment:
Q  21 cttgaacttgttgattggcccataataaagtaaaagtacatg 62  Q
    ||||||| |||||||||||||| ||| |||||||||||||||    
T  20953003 cttgaacatgttgattggcccagaatgaagtaaaagtacatg 20952962  T

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