View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4256_high_28 (Length: 236)

Name: NF4256_high_28
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4256_high_28
NF4256_high_28
[»] chr4 (46 HSPs)
chr4 (31-220)||(27466813-27467002)
chr4 (31-220)||(27473884-27474073)
chr4 (31-220)||(27516568-27516757)
chr4 (47-216)||(27460474-27460643)
chr4 (47-220)||(27469452-27469625)
chr4 (31-220)||(27513735-27513924)
chr4 (31-220)||(27526071-27526260)
chr4 (56-192)||(27476707-27476843)
chr4 (31-219)||(27505661-27505849)
chr4 (31-220)||(27500297-27500486)
chr4 (31-219)||(27523362-27523550)
chr4 (31-219)||(27479894-27480082)
chr4 (31-220)||(27486975-27487164)
chr4 (44-197)||(27557504-27557657)
chr4 (43-220)||(27498407-27498584)
chr4 (47-147)||(27502110-27502210)
chr4 (34-220)||(27444756-27444942)
chr4 (43-123)||(27501406-27501486)
chr4 (36-204)||(27502771-27502939)
chr4 (34-192)||(27431110-27431268)
chr4 (34-124)||(27554397-27554487)
chr4 (31-108)||(27567359-27567436)
chr4 (55-114)||(27559223-27559282)
chr4 (53-114)||(27446245-27446306)
chr4 (72-189)||(27563346-27563463)
chr4 (36-116)||(27507777-27507857)
chr4 (65-189)||(27585711-27585835)
chr4 (72-183)||(27412693-27412804)
chr4 (65-104)||(27495644-27495683)
chr4 (73-116)||(27571719-27571762)
chr4 (38-116)||(27419037-27419115)
chr4 (59-220)||(17970291-17970452)
chr4 (71-116)||(27411455-27411500)
chr4 (34-123)||(27504011-27504100)
chr4 (65-185)||(27415648-27415768)
chr4 (65-116)||(27414297-27414348)
chr4 (72-123)||(27468327-27468378)
chr4 (65-104)||(27600661-27600700)
chr4 (31-105)||(27421890-27421964)
chr4 (65-123)||(27514980-27515038)
chr4 (72-137)||(27420483-27420548)
chr4 (72-181)||(27425843-27425952)
chr4 (55-116)||(27556362-27556423)
chr4 (72-116)||(27485943-27485987)
chr4 (72-116)||(27506794-27506838)
chr4 (72-124)||(27524612-27524664)
[»] chr5 (3 HSPs)
chr5 (31-208)||(1759252-1759433)
chr5 (36-124)||(1754206-1754293)
chr5 (65-114)||(1754786-1754835)
[»] chr3 (11 HSPs)
chr3 (56-116)||(48840696-48840756)
chr3 (72-219)||(38043896-38044043)
chr3 (38-109)||(50904758-50904829)
chr3 (56-123)||(50910049-50910116)
chr3 (56-123)||(55084875-55084942)
chr3 (56-123)||(38028750-38028817)
chr3 (65-123)||(38024868-38024926)
chr3 (65-123)||(38031320-38031378)
chr3 (56-123)||(38040065-38040132)
chr3 (56-123)||(50911853-50911920)
chr3 (65-104)||(55088044-55088083)
[»] chr2 (1 HSPs)
chr2 (59-220)||(3073561-3073722)
[»] chr8 (2 HSPs)
chr8 (56-123)||(21604738-21604805)
chr8 (65-123)||(21607289-21607347)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 27467002 - 27466813
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27467002 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 27466903  T
Q  131 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27466902 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacactgctagatat 27466813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 27474073 - 27473884
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 130  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27474073 tcaattcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttgg 27473974  T
Q  131 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27473973 ctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatat 27473884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 27516568 - 27516757
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 130  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||  ||||    
T  27516568 tcaattcaagttagaagtgatatctaagaaaacttcttctttgcaaggaatagtgagaccccccattggatggtcatattcaaattgttcctcagcttgg 27516667  T
Q  131 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
     ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  27516668 ttcaacaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatgtcctttcctacatacacagctagatat 27516757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 47 - 216
Target Start/End: Complemental strand, 27460643 - 27460474
Alignment:
Q  47 gtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttgga 146  Q
    ||||| || |||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27460643 gtgatatccaagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttgga 27460544  T
Q  147 ataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctag 216  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||    
T  27460543 atgatttttgcttcaaatatgatatagggatcacaaatctcttcatgtcctctcctatgtacactgctag 27460474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 27469625 - 27469452
Alignment:
Q  47 gtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttgga 146  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||||| |    
T  27469625 gtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgta 27469526  T
Q  147 ataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
    || || ||||||||||||||||||||||||||||||| | |||||| | || |||||||||||| |||||||||    
T  27469525 atgatgtttgcttcaaatatgatatagggatcacaaaccgcttcattttctctcctacgtacactgctagatat 27469452  T

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Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 27513735 - 27513924
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 130  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||    
T  27513735 tcaattcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttgg 27513834  T
Q  131 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
     ||| || |||||||||  |  |||| ||||| |||||||| ||||||||||| | |||||| | || |||||| ||||| |||||||||    
T  27513835 ttcaacaattcttggaacgaggtttggttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatat 27513924  T

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Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 27526071 - 27526260
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 130  Q
    ||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||    
T  27526071 tcaattcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttgg 27526170  T
Q  131 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
    |||| || |||||||||| |  |||| ||||| ||||||| ||| |||||||| | |||||| | || ||| || ||||| |||||||||    
T  27526171 ctcaacaattcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcattttctctccaacatacactgctagatat 27526260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 27476843 - 27476707
Alignment:
Q  56 aagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaataattttt 155  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||    
T  27476843 aagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaatgaggttt 27476744  T
Q  156 gcttcaaatatgatatagggatcacaaatctcttcat 192  Q
    | ||||| ||||||| ||| |||||||| | ||||||    
T  27476743 ggttcaagtatgatacaggaatcacaaaccgcttcat 27476707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 27505661 - 27505849
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 130  Q
    ||||||||||  |||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||    
T  27505661 tcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttgg 27505760  T
Q  131 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagata 219  Q
     ||| || |||||||||| |  |||| ||||| ||||||| ||| |||||||| | |||||| | || |||||||||||| ||||||||    
T  27505761 ttcaacaattcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagata 27505849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 27500297 - 27500486
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 130  Q
    ||||||||||| ||||||||  ||||||||||  ||||||||||||||||||||||  |||||||||||||| |||||| | || ||||| |||  ||||    
T  27500297 tcaattcaagcaagaagtgaattctaagaaaaggtcttctctgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcagattgg 27500396  T
Q  131 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
    ||||||| |||||||||| |  |||| || || |||||||||||||||||||||| |||||| | || |||||||||||| |||||||||    
T  27500397 ctcagcaattcttggaatgaactttggtttaagtatgatatagggatcacaaatcgcttcattttctctcctacgtacactgctagatat 27500486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 27523362 - 27523550
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 130  Q
    ||||||||||  |||||| || ||||||||||  |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||   || |    
T  27523362 tcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagttagaccacccattggatggtcatattcaaattgttcctcggcttcg 27523461  T
Q  131 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagata 219  Q
    |||| || |||||||||| |  |||| ||||||||||||| ||| |||||||| | |||||| | || |||||||||||| ||||||||    
T  27523462 ctcaacaattcttggaatgaagtttggttcaaatatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagata 27523550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 27480082 - 27479894
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 130  Q
    ||||||||||  |||| | || ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||    
T  27480082 tcaattcaagtgagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttgg 27479983  T
Q  131 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagata 219  Q
     ||| ||  | ||||||| || |||| ||||| ||||||| ||| |||||||| | |||||| | || ||||||||| || ||||||||    
T  27479982 ttcaacaacttttggaatgatgtttggttcaagtatgatacaggaatcacaaaacgcttcattttctctcctacgtatactgctagata 27479894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 27487164 - 27486975
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttgg 130  Q
    ||||||||||  |||||| || ||||||||||  |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||  ||||    
T  27487164 tcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttgg 27487065  T
Q  131 ctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
     ||| || |||||| ||  ||  ||| || || ||||||| |||||||||||| | |||||| | || |||||||||||| |||||||||    
T  27487064 ttcaacaattcttgaaacgatggttggtttaagtatgataaagggatcacaaaccgcttcattttctctcctacgtacactgctagatat 27486975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 27557657 - 27557504
Alignment:
Q  44 gaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttctt 143  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  |||  |||||| |||||    
T  27557657 gaagtgatatctaagaaaacatcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattctt 27557558  T
Q  144 ggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcct 197  Q
    | ||| ||  ||| || || ||||| || ||||||||||| |||||||| ||||    
T  27557557 gaaatgatggttggtttaagtatgacattgggatcacaaacctcttcatttcct 27557504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 220
Target Start/End: Complemental strand, 27498584 - 27498407
Alignment:
Q  43 agaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttct 142  Q
    ||||||||| |||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||   |||| ||| ||  |||    
T  27498584 agaagtgatatctaagaacatgtcttctccgcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtct 27498485  T
Q  143 tggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
    |||||  ||  ||| ||||| |||||||||||||||||||| |  ||||| |||| ||| || || || |||||||||    
T  27498484 tggaacgatggttggttcaagtatgatatagggatcacaaaacgtttcatttcctctccaacatatactgctagatat 27498407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 27502110 - 27502210
Alignment:
Q  47 gtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttgga 146  Q
    ||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||| ||| || ||||||||    
T  27502110 gtgatatctaagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaattcttgga 27502209  T
Q  147 a 147  Q
    |    
T  27502210 a 27502210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 27444756 - 27444942
Alignment:
Q  34 attcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctc 133  Q
    |||||| | |||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||   |||  ||    
T  27444756 attcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattc 27444855  T
Q  134 agcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
    |  | |||||| ||| ||  |||  |||| |||||||| ||||||||||| |||||||| |||| ||| ||||| || || ||||||    
T  27444856 aataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatat 27444942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 27501486 - 27501406
Alignment:
Q  43 agaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    ||||||||| |||||||| |  |||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  27501486 agaagtgatatctaagaacatgtcttctctacaaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctc 27501406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 27502771 - 27502939
Alignment:
Q  36 tcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcag 135  Q
    |||||| ||||||||| |||| |||||  ||||||   ||||||||||| ||||||||||||||||| |||||| |||||| |||| ||  |||||||||    
T  27502771 tcaagcgagaagtgatatctacgaaaaaatcttcttcacaaggaatagtaagaccacccattggatggtcatatccaaattcttccacagcttggctcag 27502870  T
Q  136 cagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctac 204  Q
    ||  ||||| ||| |  |||| ||||||||||| || || |||||||| | |||||||| || ||||||    
T  27502871 caagtcttgaaatgaagtttgattcaaatatgacattggaatcacaaaccgcttcatcttctctcctac 27502939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 27431110 - 27431268
Alignment:
Q  34 attcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctc 133  Q
    |||||| | |||||| || | ||||||||| ||||||||||||||||| |||||||||||  ||||||| |||||| |||||||||||||   |||  ||    
T  27431110 attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattc 27431209  T
Q  134 agcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcat 192  Q
    | || |||||| ||| |   ||| ||||| |||||||| ||||||||||| ||||||||    
T  27431210 aacaattcttgaaatgacggttggttcaagtatgatattgggatcacaaacctcttcat 27431268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 27554487 - 27554397
Alignment:
Q  34 attcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctca 124  Q
    |||||| | |||||| || ||||||||||| |||||||| |||||||| ||||||| |||| |||||||||||||| ||||||||||||||    
T  27554487 attcaaacgagaagtaatatctaagaaaacgtcttctctacaaggaattgtgagactacccgttggatgatcatatccaaattgttcctca 27554397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 27567436 - 27567359
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcata 108  Q
    ||||||||||  ||||||||  ||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||    
T  27567436 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacccattggatgatcata 27567359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 27559223 - 27559282
Alignment:
Q  55 taagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaa 114  Q
    ||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||| ||||    
T  27559223 taagaaagcatcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaa 27559282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 27446306 - 27446245
Alignment:
Q  53 tctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaa 114  Q
    ||||||||||| ||||| ||||||||||| | ||||||| ||||| ||||||||||||||||    
T  27446306 tctaagaaaacatcttcactgcaaggaatcgagagaccatccattcgatgatcatattcaaa 27446245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 27563346 - 27563463
Alignment:
Q  72 tgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaataatttttgcttcaaatatgatat 171  Q
    |||||||||| ||||| ||||||||||||||||||||| |||| | ||| ||   ||| |||||||  ||||| || ||| |||| ||||| |||||||     
T  27563346 tgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggcttgactcagcaaatcttgaaacaatgtttggttcaagtatgatac 27563445  T
Q  172 agggatcacaaatctctt 189  Q
     |||||||||| ||||||    
T  27563446 ggggatcacaattctctt 27563463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 27507777 - 27507857
Alignment:
Q  36 tcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaatt 116  Q
    |||||| ||||||||| ||||||||||  ||||||   |||||||| || ||||||||||||||||| |||||| ||||||    
T  27507777 tcaagcgagaagtgatatctaagaaaagatcttcttcacaaggaattgtaagaccacccattggatggtcatatccaaatt 27507857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 27585835 - 27585711
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaataatttttgcttcaaat 164  Q
    |||||| |||||||||| |||||||| |||||||||||||||||| |||| | ||| ||   ||| |||| ||  ||||| || |||  ||| ||||| |    
T  27585835 tcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgactcatcaaatcttgaaacaatggttggttcaagt 27585736  T
Q  165 atgatatagggatcacaaatctctt 189  Q
    ||||||  |||||||||||||||||    
T  27585735 atgatacggggatcacaaatctctt 27585711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 27412804 - 27412693
Alignment:
Q  72 tgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaataatttttgcttcaaatatgatat 171  Q
    |||||||||| ||||| ||||||||||||||||||||| |||| | ||| |||  ||| ||||  |  ||||| ||||||  ||| ||||| ||||||||    
T  27412804 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat 27412705  T
Q  172 agggatcacaaa 183  Q
     |||||||||||    
T  27412704 tgggatcacaaa 27412693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 27495683 - 27495644
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgat 104  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  27495683 tcttctctgcaaggaatggtgagaccacccattggatgat 27495644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 27571762 - 27571719
Alignment:
Q  73 gcaaggaatagtgagaccacccattggatgatcatattcaaatt 116  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaatt 27571719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 27419037 - 27419115
Alignment:
Q  38 aagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaatt 116  Q
    |||| ||||||||  | ||||||| | ||||| | ||||||||| || |||||||||||||||||||||||| ||||||    
T  27419037 aagcgagaagtgagttgtaagaaagcatcttcaccgcaaggaattgtaagaccacccattggatgatcatatccaaatt 27419115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 17970452 - 17970291
Alignment:
Q  59 aaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaataatttttgct 158  Q
    ||||| |||||| |||||||||| ||||| ||||||||||||||||| ||| | |||| ||||||     | |||||||  | ||| ||| |  |||| |    
T  17970452 aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggt 17970353  T
Q  159 tcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
    |||| |||||  ||||||||||||| | |||||| |||| ||| |||||||| || ||||||    
T  17970352 tcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatat 17970291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 27411455 - 27411500
Alignment:
Q  71 ctgcaaggaatagtgagaccacccattggatgatcatattcaaatt 116  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||||    
T  27411455 ctgcaaggaattgtgagaccacccataggatgatcatatccaaatt 27411500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 27504100 - 27504011
Alignment:
Q  34 attcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    |||||||| |||||| |||| |  ||| || |||||  |||||||||| ||||| ||||||||||||||||||||| |||| | ||||||    
T  27504100 attcaagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctc 27504011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 27415768 - 27415648
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaataatttttgcttcaaat 164  Q
    |||||| |||||||||| ||||| |||||||| | |||||||||| |||| | |||||||  ||| |||| ||  ||||| ||  ||  ||| ||||| |    
T  27415768 tcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagt 27415669  T
Q  165 atgatatagggatcacaaatc 185  Q
    ||||||| |||||||||||||    
T  27415668 atgatatggggatcacaaatc 27415648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 27414297 - 27414348
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaatt 116  Q
    ||||| ||||| ||||| || |||||||||||||||||||||||| ||||||    
T  27414297 tcttcactgcacggaattgtaagaccacccattggatgatcatatccaaatt 27414348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 27468327 - 27468378
Alignment:
Q  72 tgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    |||||||||| ||||| |||||||| |||||||||||| |||||| ||||||    
T  27468327 tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctc 27468378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 27600700 - 27600661
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgat 104  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  27600700 tcttctttgcaaggaattgtgagaccacccattggatgat 27600661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 27421890 - 27421964
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatc 105  Q
    ||||||||| | ||||||||  | |||||||   ||||| ||||||||||| |||||||||||| ||||||||||    
T  27421890 tcaattcaatcgagaagtgagttgtaagaaagaatcttcactgcaaggaattgtgagaccacccgttggatgatc 27421964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 27515038 - 27514980
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    |||||| | |||||||| ||||| |||||||| |||||||||||| |||||| ||||||    
T  27515038 tcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctc 27514980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 27420548 - 27420483
Alignment:
Q  72 tgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagca 137  Q
    |||||||||| ||||| |||||||| |||||||||||| |||| | |||||||  ||| |||||||    
T  27420548 tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaacttgactcagca 27420483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 27425952 - 27425843
Alignment:
Q  72 tgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaataatttttgcttcaaatatgatat 171  Q
    |||||||||| ||||| |||||||| |||||||||||| |||| | |||||||  ||| ||||  |  ||||| ||| ||  ||| ||||| ||||||||    
T  27425952 tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaatgatggttggttcaagtatgatat 27425853  T
Q  172 agggatcaca 181  Q
     |||||||||    
T  27425852 tgggatcaca 27425843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 27556362 - 27556423
Alignment:
Q  55 taagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaatt 116  Q
    ||||||| | ||||| ||||| ||||| |||||||||||||| | |||||||||| ||||||    
T  27556362 taagaaagcatcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaatt 27556423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 27485943 - 27485987
Alignment:
Q  72 tgcaaggaatagtgagaccacccattggatgatcatattcaaatt 116  Q
    |||||||||| ||||| |||||||| |||||||||||| ||||||    
T  27485943 tgcaaggaatggtgaggccacccatgggatgatcatatccaaatt 27485987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 27506838 - 27506794
Alignment:
Q  72 tgcaaggaatagtgagaccacccattggatgatcatattcaaatt 116  Q
    |||||||||| ||||| |||||||| |||||||||||| ||||||    
T  27506838 tgcaaggaatggtgagtccacccatgggatgatcatatccaaatt 27506794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 27524664 - 27524612
Alignment:
Q  72 tgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctca 124  Q
    |||| ||||| ||||| ||||||||||||||||||||| |||| | |||||||    
T  27524664 tgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctca 27524612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 1759433 - 1759252
Alignment:
Q  31 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctca-ct--- 126  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |  |||||||||||||||||| ||       
T  1759433 tcaattcaagtgagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagaccacccattggatggttgtattcaaattgttcctcagcttgc 1759334  T
Q  127 ttggctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtac 208  Q
    |||||||| || |||||||||| || |||| || |||||||||| ||| |||||||| | |||||| | || ||||||||||    
T  1759333 ttggctcaacaattcttggaatgatgtttggtttaaatatgatacaggaatcacaaaccgcttcattttctctcctacgtac 1759252  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 1754206 - 1754293
Alignment:
Q  36 tcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctca 124  Q
    |||||| ||||||||| ||||||||||  | |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  1754206 tcaagcgagaagtgatatctaagaaaaggt-ttctctacaaggaatagtgagaccacccatcggatgatcatattcaaactgttcctca 1754293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 1754835 - 1754786
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaa 114  Q
    |||||| ||||| |||| ||||| ||||||||||||||||||||| ||||    
T  1754835 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaa 1754786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 48840696 - 48840756
Alignment:
Q  56 aagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaatt 116  Q
    |||||||| |||||| |||||||||| ||||| ||||||||||||||||||||| ||||||    
T  48840696 aagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaatt 48840756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 38044043 - 38043896
Alignment:
Q  72 tgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaataatttttgcttcaaatatgatat 171  Q
    |||||||||| ||||| || |||||||||||||||||| |||||| ||||||   ||| |||||||  ||||| ||  |  |||| ||||| ||||| ||    
T  38044043 tgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatgacat 38043944  T
Q  172 agggatcacaaatctcttcatctcctttcctacgtacacagctagata 219  Q
    |||||||||||| | |||||| |||| ||| | |||||| || |||||    
T  38043943 agggatcacaaaccgcttcatttcctctccaaagtacactgcaagata 38043896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 50904758 - 50904829
Alignment:
Q  38 aagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatat 109  Q
    |||| ||||||||| |  || ||||| ||||||||||||||||| ||||| |||||||||||||||||||||    
T  50904758 aagcgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatgatcatat 50904829  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 50910116 - 50910049
Alignment:
Q  56 aagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    ||||| || |||||| |||||||||| ||||| ||||||||||||||||||||| |||||| ||||||    
T  50910116 aagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctc 50910049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 55084942 - 55084875
Alignment:
Q  56 aagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    |||||||| |||||| |||||||||| ||||| ||||||||||||||||| ||| |||||| ||||||    
T  55084942 aagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctc 55084875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 38028750 - 38028817
Alignment:
Q  56 aagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    |||||||| |||||| |||||||||| ||||| || ||||||||||| |||||| |||||| ||||||    
T  38028750 aagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctc 38028817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 38024868 - 38024926
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    |||||| |||||||||| ||||| ||||||||||| ||||||||| |||||| ||||||    
T  38024868 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctc 38024926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 38031320 - 38031378
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    |||||| |||||||||| ||||| ||||||||||| ||||||||| |||||| ||||||    
T  38031320 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctc 38031378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 38040065 - 38040132
Alignment:
Q  56 aagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    |||||||| |||||| |||||||||| ||||| || ||||||||||| |||||| | |||| ||||||    
T  38040065 aagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctc 38040132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 50911853 - 50911920
Alignment:
Q  56 aagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    ||||||||  ||||| |||||||||| || || ||||||||||| ||||||||| |||||| ||||||    
T  50911853 aagaaaacaccttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctc 50911920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 55088044 - 55088083
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgat 104  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  55088044 tcttctttgcatggaatagtgagaccacccattggatgat 55088083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 3073722 - 3073561
Alignment:
Q  59 aaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaataatttttgct 158  Q
    ||||| |||||| |||||||||| ||||| ||||||||||||||||| ||| | |||| ||||||     | |||||||  | ||| ||| |  |||| |    
T  3073722 aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggt 3073623  T
Q  159 tcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacacagctagatat 220  Q
    |||| |||||  ||||||||||||| | |||||| |||| ||| |||||||| || ||||||    
T  3073622 tcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatat 3073561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 21604738 - 21604805
Alignment:
Q  56 aagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    |||||||| |||||| |||||||||| ||||| || ||||||||||| |||||| | |||| ||||||    
T  21604738 aagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatcctaattcttcctc 21604805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 21607289 - 21607347
Alignment:
Q  65 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 123  Q
    |||||| |||||||||  ||||| ||||||||||| ||||||||| |||||| ||||||    
T  21607289 tcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctc 21607347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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