View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4256_high_3 (Length: 569)

Name: NF4256_high_3
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4256_high_3
NF4256_high_3
[»] chr7 (4 HSPs)
chr7 (18-560)||(39954595-39955137)
chr7 (18-317)||(10575277-10575576)
chr7 (198-270)||(354475-354547)
chr7 (41-115)||(354317-354391)
[»] chr4 (3 HSPs)
chr4 (23-318)||(53328609-53328904)
chr4 (18-294)||(22898443-22898719)
chr4 (18-294)||(22950111-22950387)
[»] chr5 (1 HSPs)
chr5 (20-318)||(26358540-26358838)
[»] chr3 (7 HSPs)
chr3 (18-317)||(24919879-24920178)
chr3 (18-317)||(24981936-24982235)
chr3 (18-309)||(25084928-25085219)
chr3 (26-303)||(24923467-24923744)
chr3 (41-317)||(31825550-31825826)
chr3 (18-309)||(24497260-24497551)
chr3 (18-294)||(21584613-21584889)
[»] chr2 (1 HSPs)
chr2 (18-300)||(41027462-41027744)
[»] chr8 (1 HSPs)
chr8 (18-317)||(14261025-14261324)


Alignment Details
Target: chr7 (Bit Score: 531; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Complemental strand, 39955137 - 39954595
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39955137 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgacaacatccaaggcataaccaagcctgcgattcgtcg 39955038  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgct 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39955037 tcttgcaaggcgtggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgct 39954938  T
Q  218 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954937 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 39954838  T
Q  318 aaatttagggtttagtttgttctggtcgatttagttctaaatctggttaatataaatttagtagtcttagatctggttgaatgcttagttctgtggttct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39954837 aaatttagggtttagtttgttctggtcgatttagttctaaatctggttaatataaatttagtagtcttagatctggttgaatgcttagtcctgtggttct 39954738  T
Q  418 agtatttggacttgtatcttaattcttaacgatgaatgaatgaattttgtctttgctgaaattactttgaacctagcacatttgcttttacttttaattt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954737 agtatttggacttgtatcttaattcttaacgatgaatgaatgaattttgtctttgctgaaattactttgaacctagcacatttgcttttacttttaattt 39954638  T
Q  518 tgtgagaatataatctgtttgaattttacatttgtttcatctc 560  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39954637 tgtgagaatataatctgtttgaattttacatttgtttcatctc 39954595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 10575277 - 10575576
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    ||||||| ||||| || ||||| |||||||| || |||||||| ||  | |||||||| || || ||||||||||| || || ||||| |||||||||||    
T  10575277 gtggaaagggaggtaaaggattaggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcg 10575376  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgct 217  Q
      | || ||  | || |||||||| ||||| || ||  | ||||| || || ||  | |||||  | ||||||||  | |||||||| ||  | ||||||    
T  10575377 attggcgagaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgct 10575476  T
Q  218 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 317  Q
    |||||||||||||||||||| |||||||||||||| || || ||||||||||| || || || ||||| || ||||| || ||||| |||||||||||||    
T  10575477 gttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcggtggtt 10575576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 354475 - 354547
Alignment:
Q  198 agaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 270  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||| ||| | || || |||||||||||    
T  354475 agaatgagatttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgt 354547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 354317 - 354391
Alignment:
Q  41 ggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgt 115  Q
    ||||||||||| |||||| | || || ||||||||| ||| |||||| ||||| ||||| ||||| |||||||||    
T  354317 ggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgt 354391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 23 - 318
Target Start/End: Original strand, 53328609 - 53328904
Alignment:
Q  23 aaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcgtcttg 122  Q
    |||||||||||||| || |||||||| ||||| ||  | ||| | |||||||| |||||||||||||| || || || |||||||||||||||||||| |    
T  53328609 aaaggaggaaagggtttaggaaagggtggagcgaaacgacaccgtaaggttctgcgcgataacatccagggaatcacaaagcctgcgattcgtcgtctcg 53328708  T
Q  123 caaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttac 222  Q
    |||| ||||||||||||||| | || || ||  | ||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||    
T  53328709 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcac 53328808  T
Q  223 ttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtta 318  Q
     ||||| ||||||||| |  | || |||||||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||    
T  53328809 atacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaaggactctttacggtttcgggggtta 53328904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 22898443 - 22898719
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    |||||||||| |||||||| ||||||||||| ||||||||| | ||  | ||||| ||||| || |||||||| || ||||| ||||| |||||||||||    
T  22898443 gtggaaaaggtggaaagggtttgggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcg 22898542  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgct 217  Q
    ||||||  |  | || || |||||| | || || ||| | || || || ||||| || || ||  | ||||| ||| | |||||||||||| | ||||||    
T  22898543 tcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgct 22898642  T
Q  218 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 294  Q
    || |||||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| |||||||| ||||||||    
T  22898643 gtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaag 22898719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 22950111 - 22950387
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    |||||||||| |||||||| ||||||||||| ||||||||| | ||  | ||||| ||||| || |||||||| || ||||| ||||| |||||||||||    
T  22950111 gtggaaaaggtggaaagggtttgggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcg 22950210  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgct 217  Q
    ||||||  |  | || || |||||| | || || ||| | || || || ||||| || || ||  | ||||| ||| | |||||||||||| | ||||||    
T  22950211 tcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgct 22950310  T
Q  218 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 294  Q
    || |||||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| |||||||| ||||||||    
T  22950311 gtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaag 22950387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 26358838 - 26358540
Alignment:
Q  20 ggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcgtc 119  Q
    ||||||||||||||||| || |||||||| || |||||| | ||  | || |||||||| |||||||| || || || ||||| || |||||||||||||    
T  26358838 ggaaaaggaggaaagggtttaggaaagggtggtgcaaagcgtcatcgcaaagttcttcgagataacattcagggaattaccaaacccgcgattcgtcgtc 26358739  T
Q  120 ttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgt 219  Q
    ||||||||||||||||||| ||  | || || ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  26358738 ttgcaaggcgtggtggtgtaaaacgtatcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgt 26358639  T
Q  220 tacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtta 318  Q
     ||||||||||| |||||| |  | ||||| ||||| || ||||||||||| ||||| ||||||||||| |||||||| || || ||||| || |||||    
T  26358638 cacttacactgaacatgctcgtcgcaaaacagttactgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttttgggggtta 26358540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 24920178 - 24919879
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||| || || |||||||| ||||||||||| || || ||||||||||| ||||||||    
T  24920178 gtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgcaattcgtcg 24920079  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgct 217  Q
      | |||||  | ||||||||||||||||| |||||| | ||||| ||||| ||  | |||||  | ||||||||  | |||||||| ||||||||||||    
T  24920078 attggcaagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgct 24919979  T
Q  218 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 317  Q
    || || ||||||||||| ||||||||||| || || || ||||||||||| || |||||| | |||||||||||||| || ||||| || ||||| ||||    
T  24919978 gtgacatacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccctctatggattcggaggtt 24919879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 24981936 - 24982235
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    ||||||||||||| |||||| | ||||||||||| ||||||||||| || || |||||||| ||||||||||| || || ||||||||||| ||||||||    
T  24981936 gtggaaaaggaggtaagggactaggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcg 24982035  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgct 217  Q
      | |||||  | |||||||| |||||||| || ||| | || || ||||| ||  | |||||  | ||||||||  | |||||||| || ||||||||     
T  24982036 attggcaagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgca 24982135  T
Q  218 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 317  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | ||||| || ||||| || ||||| |||||||||||||    
T  24982136 gttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggtt 24982235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 25084928 - 25085219
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| || || ||||||||||| |||||| |    
T  25084928 gtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtag 25085027  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgct 217  Q
      | || ||  | ||||||||||||||||| || ||| | || || ||||| ||  | |||||  | ||||||||  | ||||||||||| ||||||||     
T  25085028 attggcgagaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgca 25085127  T
Q  218 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggttt 309  Q
    ||||| ||||||||||| || |||||||| ||||| || |||||||||||||| |||||| | ||||| |||||||| || ||||| |||||    
T  25085128 gttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggttt 25085219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 26 - 303
Target Start/End: Complemental strand, 24923744 - 24923467
Alignment:
Q  26 ggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcgtcttgcaa 125  Q
    ||||| |||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||||||| || || ||||||||||| ||||||||  | ||||    
T  24923744 ggaggtaagggactcggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaa 24923645  T
Q  126 ggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttactta 225  Q
    |  | |||||||| |||||||| || ||| | ||||| ||||| ||  | |||||  | ||||||||  | |||||||| |||||||||||||| || ||    
T  24923644 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacata 24923545  T
Q  226 cactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctcta 303  Q
    ||||||||| || |||||||| || || || |||||||||||||| |||||| | ||||| |||||||| || |||||    
T  24923544 cactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctcta 24923467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 41 - 317
Target Start/End: Complemental strand, 31825826 - 31825550
Alignment:
Q  41 ggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcgtcttgcaaggcgtggtggtgtga 140  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| || || || |||||||| ||||||||  | || ||  | ||||||||||    
T  31825826 ggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtga 31825727  T
Q  141 agagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactgagcatgctag 240  Q
    |||| || || ||| | ||||| ||||| ||| | |||||  | ||||||||  | |||||||| || |||||||| || || ||||||||||| |||||    
T  31825726 agaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgctag 31825627  T
Q  241 gaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 317  Q
    |||||| || |||||||| ||||||||||| |||||| | |||||||||||||| || ||||| || ||||| ||||    
T  31825626 gaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggtt 31825550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 24497551 - 24497260
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    ||||||| ||||| |||||| | ||||||||||| ||||||||||| || ||||||||||| || |||||||| || || ||||||||||| ||||||||    
T  24497551 gtggaaagggaggtaagggactcggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcg 24497452  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgct 217  Q
      | |||||  | |||||||| |||||||| || ||  | ||||| ||||| ||  | |||||  | ||||||||  | || |||||||| ||||||||     
T  24497451 attggcaagaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgca 24497352  T
Q  218 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggttt 309  Q
    ||||| ||||||||||| || |||||||| ||||| || |||||||||||||| |||||| | ||||| || ||||| || ||||| |||||    
T  24497351 gttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttt 24497260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 21584889 - 21584613
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    ||||||| ||||| |||||| | ||||||||||| |||||||| ||||| || |||||||| |||||||| || || || |||||||| |||||||||||    
T  21584889 gtggaaagggaggtaagggactaggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcg 21584790  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttg-agaatgtgattcgtgatgc 216  Q
      | || ||  | |||||||| |||||||| || ||| | || || || || ||  | || ||||| ||||| ||||||| |||||||||||||||||||    
T  21584789 attggcgagaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagat-tttcttggagaatgtgattcgtgatgc 21584691  T
Q  217 tgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 294  Q
     ||||| |||||||||||||| |||||||| ||||| || || ||||||||||| |||||| | |||||||| |||||    
T  21584690 ggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaag 21584613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 41027462 - 41027744
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    |||||||||| |||||||||||||||||||||||||||||  | ||| | ||||| ||||| |||||||| ||||| || || |||||||||||||||||    
T  41027462 gtggaaaaggtggaaagggattgggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacattcaaggaattacgaagcctgcgattcgtcg 41027561  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgct 217  Q
    | | ||| |  | || || |||||| | || |||||| | |||||||||||||| || || ||  | ||||||||| | |||||||| ||||||||||||    
T  41027562 tttggcacgtagaggaggagtgaagcgtataagcggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgct 41027661  T
Q  218 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactct 300  Q
    ||||||||||| ||||| |||||||| || |||||||| || ||||||||||| |||||  | ||||| || |||||||||||    
T  41027662 gttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattgaagagacaaggaaggactct 41027744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 14261324 - 14261025
Alignment:
Q  18 gtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgataacatccaaggcataaccaagcctgcgattcgtcg 117  Q
    ||||||| ||||| |||||||| ||||||||||| |||||||| ||  | || || ||||| || ||||||||||| || || ||||| |||||||| ||    
T  14261324 gtggaaagggaggtaagggattaggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcg 14261225  T
Q  118 tcttgcaaggcgtggtggtgtgaagagaattagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttg-agaatgtgattcgtgatgc 216  Q
      | || ||  | || |||||||||||||| |||||  | || || ||||| |||||||||||  | ||||| ||||||| ||||||||||  | |||||    
T  14261224 attagcgagaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagat-tttcttggagaatgtgataagagatgc 14261126  T
Q  217 tgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggt 316  Q
    |||||| || ||||| ||||| |||||||| || ||||| || ||||||||||| |||||  | ||||| || ||||||||| | || |||||||| |||    
T  14261125 tgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcggaggt 14261026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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