View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_12 (Length: 389)
Name: NF4256_low_12
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 56313947 - 56314313
Alignment:
| Q |
19 |
aatcatccaaatccgaatcatttgtctacattgctgatgcaaccgatgttaccaaatcaatttccaactaccttctctgaccgactgtgggactggaatc |
118 |
Q |
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| T |
56313947 |
aatcatccaaatccgaatcatttgtctacattgctgatgcaaccaatgttaccaaatcaatttccaactaccttctctgaccgactgtgggactggaatc |
56314046 |
T |
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| Q |
119 |
caatccctgaggatcataatcaccccaacagtagtaacaacacctccttcaagtaatcactaattactcagttctaagttttaattatatttatatatgc |
218 |
Q |
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| T |
56314047 |
caatccctgaggatcataatcaccccaacagtagtaacaacacctccttcaagtaatcactaattactcagttctaagttttaattatatttatatatgc |
56314146 |
T |
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| Q |
219 |
aatgcatcaaccctactacctactatataatgcaaatacatatattgatacatgagccagttgatttcagttatcaactttatgtaggttgtttttctaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56314147 |
aatgcatcaaccctactacctactatataatgcaaatacatatattgatacatgagccagttgatttcagttatcaactttatgtaggttgtttttctaa |
56314246 |
T |
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| Q |
319 |
ttactctgattattcggcctgtatcccttgatttcaataacatatatatagttgtatcattactcat |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56314247 |
ttactctgattattcggcctgtatcccttgatttcaataacatatatatagttgtatcattactcat |
56314313 |
T |
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