View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4256_low_14 (Length: 371)

Name: NF4256_low_14
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4256_low_14
NF4256_low_14
[»] chr8 (1 HSPs)
chr8 (10-371)||(6993689-6994047)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 6993689 - 6994047
Alignment:
Q  10 catcatcatgattattataaatgaatccttgtcnnnnnnntaattattataaaagaagcattaattatcaaagttaaagaagcatgattataaaagaann 109  Q
    ||||||||| |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      
T  6993689 catcatcatcattattataaatgaatccttgtcaaaaaaataattattataaaagaagcattaattatcaaagttaaagaagcattattataaaagaatt 6993788  T
Q  110 nnnnnnaatacgtacctctctaatttgcttgtgaaattagggaccgctctctatatttattttatctttcattctctatttttcttcaataattcaacnn 209  Q
           |    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  6993789 tttttttaa---tacatctctaatttccttgtgaaattagggaccgctctctatatttattttatctttcattctctatttttcttcaataattcaactt 6993885  T
Q  210 nnnnnagtagctcatgagaaagaggaaagataaatacgtgcctccgactacaaatatggctgctagctattttatttttaactagctaggctacctactt 309  Q
         ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6993886 tctttagtagctcatgagaaagaggaaatataaatacgtgcctccgactacaaatatggctgctagctattttatttttaactagctaggatacctactt 6993985  T
Q  310 gctaaaattattattcttgcgtggtgttaaaaaagaaggaatctctcttgaaatatttgttc 371  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  6993986 gctaaaattattattcttgtgtggagttaaaaaagaaggaatctctcttgaaatatttgttc 6994047  T

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