View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4256_low_16 (Length: 338)

Name: NF4256_low_16
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4256_low_16
NF4256_low_16
[»] chr1 (4 HSPs)
chr1 (10-324)||(31881808-31882120)
chr1 (13-76)||(31886002-31886063)
chr1 (247-303)||(38533529-38533585)
chr1 (247-303)||(38555747-38555803)
[»] chr3 (4 HSPs)
chr3 (202-290)||(14504955-14505043)
chr3 (209-287)||(15789180-15789258)
chr3 (212-287)||(8969226-8969301)
chr3 (211-281)||(34934296-34934366)
[»] chr6 (1 HSPs)
chr6 (212-290)||(10515308-10515386)
[»] chr5 (2 HSPs)
chr5 (209-287)||(8723847-8723925)
chr5 (211-290)||(20586791-20586870)
[»] chr7 (2 HSPs)
chr7 (193-290)||(5611766-5611863)
chr7 (211-290)||(33972235-33972314)
[»] chr8 (1 HSPs)
chr8 (211-290)||(7994320-7994399)
[»] chr4 (1 HSPs)
chr4 (211-289)||(20089876-20089954)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 31881808 - 31882120
Alignment:
Q  10 aagaatatgggaaattttaaatatatgatccagcctaaatacgtcaaaacaaatgtggaacaattctctattatttcaatatgggttaacacatatagac 109  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31881808 aagaatatgggaaatt--aaatatatgatccagcctaaatacgtcaaaacaaatgtggaacaattctctattatttcaatatgggttaacacatatagac 31881905  T
Q  110 ttgtttggaagccggagaaaaatgattgctactcaattagacatacttaccgtctctatattgaggatattgtggataatatccacttgagaaaaccatg 209  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |    
T  31881906 ttgtttggaagctggagaaaaatgattgctactcagttagacatacttaccgtctctatattgaggatattgtggataatatccactctagaaaaccagg 31882005  T
Q  210 ttattggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttttcctatgcgtgtgaaattaaat 309  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||| |    
T  31882006 tcattggagtggcatatagaaattgaaagtacctccaaaagttaagaacttggtatgacgaatttgtagagattgtttccctatgcgtgtgaaattaagt 31882105  T
Q  310 agtagagatataaat 324  Q
    |||||||||||||||    
T  31882106 agtagagatataaat 31882120  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 31886002 - 31886063
Alignment:
Q  13 aatatgggaaattttaaatatatgatccagcctaaatacgtcaaaacaaatgtggaacaattct 76  Q
    |||||||||||||  |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  31886002 aatatgggaaatt--aaatatatgatccaacctaaatacatcaaaacaaatgtggaacaattct 31886063  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 38533585 - 38533529
Alignment:
Q  247 aaagttaagaatttggtatggcggatttgtagagattgttttcctatgcgtgtgaaa 303  Q
    ||||| ||||||||||||||| | || ||||||||||||||||| |  |||||||||    
T  38533585 aaagtcaagaatttggtatggagaatctgtagagattgttttccaactcgtgtgaaa 38533529  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 38555803 - 38555747
Alignment:
Q  247 aaagttaagaatttggtatggcggatttgtagagattgttttcctatgcgtgtgaaa 303  Q
    ||||| ||||||||||||||| | || ||||||||||||||||| |  |||||||||    
T  38555803 aaagtcaagaatttggtatggagaatctgtagagattgttttccaactcgtgtgaaa 38555747  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 14505043 - 14504955
Alignment:
Q  202 aaaccatgttattggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttttcc 290  Q
    |||||| | |||||||||||||| | || | || |||| || || ||||| ||||||||||||||| | ||||||||||||||||||||    
T  14505043 aaaccagggtattggagtggcatctggagactgaaagttccccccaaagtcaagaatttggtatggagaatttgtagagattgttttcc 14504955  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 15789180 - 15789258
Alignment:
Q  209 gttattggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttt 287  Q
    |||||||||||||||| | || | || |||| || || ||||||||||||||||| ||| | |||||||||||||||||    
T  15789180 gttattggagtggcatctggagactgaaagttccacctaaagttaagaatttggtgtggagaatttgtagagattgttt 15789258  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 8969301 - 8969226
Alignment:
Q  212 attggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttt 287  Q
    ||||||||||||| | |  |||| |||| ||||| |||||||||||| || ||||| | |||||||||||||||||    
T  8969301 attggagtggcatttggcgattgaaagtgcctcctaaagttaagaatctgatatggagaatttgtagagattgttt 8969226  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 34934296 - 34934366
Alignment:
Q  211 tattggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagaga 281  Q
    |||||||||||||| |||| |||| |||| || || || ||||||||||| |||||| | |||||||||||    
T  34934296 tattggagtggcatctagagattgaaagtgccccccaaggttaagaatttagtatggagaatttgtagaga 34934366  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 10515308 - 10515386
Alignment:
Q  212 attggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttttcc 290  Q
    |||||||||| |||| || |||| |||| ||||| ||||| ||||||||||| ||| | ||||||||||| ||||||||    
T  10515308 attggagtggtatatggagattgaaagtgcctcccaaagtcaagaatttggtgtggagaatttgtagagactgttttcc 10515386  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 8723847 - 8723925
Alignment:
Q  209 gttattggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttt 287  Q
    |||||||||||||||| | || | || |||| || || ||||||||||||||||| ||| | |||||||||||||||||    
T  8723847 gttattggagtggcatctggagactgaaagttccacctaaagttaagaatttggtgtggagaatttgtagagattgttt 8723925  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 20586791 - 20586870
Alignment:
Q  211 tattggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttttcc 290  Q
    ||||||||||| || | || |||| |||| ||||| ||||| ||||||||| ||||| | ||||||||||| ||||||||    
T  20586791 tattggagtggtatctggagattgaaagtgcctcctaaagtcaagaatttgatatggagaatttgtagagactgttttcc 20586870  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 290
Target Start/End: Complemental strand, 5611863 - 5611766
Alignment:
Q  193 cacttgagaaaaccatgttattggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttttcc 290  Q
    |||||| | |||||||| |||||||||||||| | || | || |||| || || ||||| ||||||||||  ||| | ||||||||||||||||||||    
T  5611863 cacttgggcaaaccatggtattggagtggcatctggagactgaaagttccccccaaagtcaagaatttggcgtggagaatttgtagagattgttttcc 5611766  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 33972235 - 33972314
Alignment:
Q  211 tattggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttttcc 290  Q
    |||||||||||||||| || |||| |||| || |||||||| | |||||| |||||| | ||||| ||||| ||||||||    
T  33972235 tattggagtggcatatggagattgaaagtgccaccaaaagtcatgaatttagtatggagaatttgcagagactgttttcc 33972314  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 7994320 - 7994399
Alignment:
Q  211 tattggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttttcc 290  Q
    ||||||||||| |||| || |||| | |||||||| ||||| ||||||||||| ||| | ||||||||||| || |||||    
T  7994320 tattggagtggtatatggagattgaatgtacctcccaaagtcaagaatttggtgtggagaatttgtagagactgctttcc 7994399  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 20089954 - 20089876
Alignment:
Q  211 tattggagtggcatatagaaattggaagtacctccaaaagttaagaatttggtatggcggatttgtagagattgttttc 289  Q
    ||||| ||||| |||| ||  ||| |||||||||| ||||| ||||| ||||| ||| | |||||||||||||||||||    
T  20089954 tattgaagtggtatatggaggttgaaagtacctcccaaagtcaagaacttggtgtggagaatttgtagagattgttttc 20089876  T

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